Gene name: TPS3
Reference locus (S288C): YMR261C
Gene biotype: protein_coding
Description: Regulatory subunit of trehalose-6-phosphate synthase/phosphatase; involved in synthesis of storage carbohydrate trehalose; expression is induced by stress conditions and repressed by the Ras-cAMP pathway; TPS3 has a paralog, TSL1, that arose from the whole genome duplication; In the N-terminal section; belongs to the glycosyltransferase 20 family
Top 10 interactors (score): TSL1 (0.999); TPS1 (0.999); TPS2 (0.999); NTH1 (0.994); NTH2 (0.988); ATH1 (0.978); UGP1 (0.946); YHL012W (0.931); GSY1 (0.92); GSY2 (0.914); GPH1 (0.832); GDB1 (0.693); GLG1 (0.662); GLK1 (0.656); FKS1 (0.652); GSC2 (0.652); GLG2 (0.65); FKS3 (0.65); PGM2 (0.602); SOD1 (0.586)
Homologues (species, bitscore): Tps1 (Drosophila melanogaster, 190.3); tps-2 (Caenorhabditis elegans, 117.1); TPS1 (Arabidopsis thaliana, 315.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:829648-832812:- | gene-YMR261C_AKU4011 | rna-NM_001182768.1_AKU4011 | cds-NP_013988.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:121593-124757:+ | gene-YMR261C_BG1 | rna-NM_001182768.1_BG1 | cds-NP_013988.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:774874-778038:- | gene-YMR261C_Bruggeman | rna-NM_001182768.1_Bruggeman | cds-NP_013988.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:777896-781060:- | gene-YMR261C_CAT1 | rna-NM_001182768.1_CAT1 | cds-NP_013988.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:761898-765062:- | gene-YMR261C_CBS1585 | rna-NM_001182768.1_CBS1585 | cds-NP_013988.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:783842-787006:- | gene-YMR261C_CBS436 | rna-NM_001182768.1_CBS436 | cds-NP_013988.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:873462-876626:- | gene-YMR261C_CBS6412 | rna-NM_001182768.1_CBS6412 | cds-NP_013988.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:761009-764173:- | gene-YMR261C_CBS6413 | rna-NM_001182768.1_CBS6413 | cds-NP_013988.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:784614-787778:- | gene-YMR261C_CENPK1137D | rna-NM_001182768.1_CENPK1137D | cds-NP_013988.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:822351-825515:- | gene-YMR261C_EthanolRed | rna-NM_001182768.1_EthanolRed | cds-NP_013988.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:768378-771542:- | gene-YMR261C_FaliES1 | rna-NM_001182768.1_FaliES1 | cds-NP_013988.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:14992-18156:+ | gene-YMR261C_JAY291 | rna-NM_001182768.1_JAY291 | cds-NP_013988.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:768723-771887:- | gene-YMR261C_MUCL30387 | rna-NM_001182768.1_MUCL30387 | cds-NP_013988.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:777316-780480:- | gene-YMR261C_MUCL30388 | rna-NM_001182768.1_MUCL30388 | cds-NP_013988.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:762986-766150:- | gene-YMR261C_MUCL39482 | rna-NM_001182768.1_MUCL39482 | cds-NP_013988.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:771051-774215:- | gene-YMR261C_MUCL42920 | rna-NM_001182768.1_MUCL42920 | cds-NP_013988.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:790159-793323:- | gene-YMR261C_NCIM3186 | rna-NM_001182768.1_NCIM3186 | cds-NP_013988.1_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:762619-765783:- | gene-YMR261C_NCYC1407 | rna-NM_001182768.1_NCYC1407 | cds-NP_013988.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:772616-775780:- | gene-YMR261C_PE2H3 | rna-NM_001182768.1_PE2H3 | cds-NP_013988.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:773662-776826:- | gene-YMR261C_PE2H4 | rna-NM_001182768.1_PE2H4 | cds-NP_013988.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:790205-793369:- | gene-YMR261C_S288C | rna-NM_001182768.1_S288C | cds-NP_013988.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:15065-18229:+ | gene-YMR261C_SA1 | rna-NM_001182768.1_SA1 | cds-NP_013988.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:764547-767711:- | gene-YMR261C_ThermosaccDry | rna-NM_001182768.1_ThermosaccDry | cds-NP_013988.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:777149-780313:- | gene-YMR261C_VR1 | rna-NM_001182768.1_VR1 | cds-NP_013988.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:179740-182904:- | gene-YMR261C_ZTW1 | rna-NM_001182768.1_ZTW1 | cds-NP_013988.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:782937-786101:- | gene-YMR261C_Sparadoxus | rna-NM_001182768.1_Sparadoxus | cds-NP_013988.1_Sparadoxus | 91.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |