Gene name: TPS1
Reference locus (S288C): YBR126C
Gene biotype: protein_coding
Description: Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 56 kDa subunit; Synthase subunit of trehalose-6-P synthase/phosphatase complex; synthesizes the storage carbohydrate trehalose, which is critically important for survival of long-term desiccation; also found in a monomeric form; expression is induced by the stress response and repressed by the Ras-cAMP pathway; protein abundance increases in response to DNA replication stress and in response to prolonged exposure to boric acid
Top 10 interactors (score): TSL1 (0.999); TPS2 (0.999); TPS3 (0.999); NTH1 (0.998); HSP104 (0.994); NTH2 (0.993); UGP1 (0.992); GSY2 (0.99); GLC3 (0.981); GSY1 (0.981); PGM2 (0.979); YBR056W (0.976); YDL124W (0.962); HSP78 (0.959); GPD1 (0.957); GLK1 (0.948); HXK1 (0.94); YHL012W (0.932); HSP26 (0.928); MSC1 (0.923)
Homologues (species, bitscore): Tps1 (Drosophila melanogaster, 328.9); tps-2 (Caenorhabditis elegans, 168.3); TPS1 (Arabidopsis thaliana, 475.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:471799-473286:- | gene-YBR126C_AKU4011 | rna-NM_001178474.1_AKU4011 | cds-NP_009684.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:462344-463831:- | gene-YBR126C_BG1 | rna-NM_001178474.1_BG1 | cds-NP_009684.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:473576-475063:- | gene-YBR126C_Bruggeman | rna-NM_001178474.1_Bruggeman | cds-NP_009684.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:476747-478234:- | gene-YBR126C_CAT1 | rna-NM_001178474.1_CAT1 | cds-NP_009684.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:463583-465070:- | gene-YBR126C_CBS1585 | rna-NM_001178474.1_CBS1585 | cds-NP_009684.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:471659-473146:- | gene-YBR126C_CBS436 | rna-NM_001178474.1_CBS436 | cds-NP_009684.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:561446-562933:- | gene-YBR126C_CBS6412 | rna-NM_001178474.1_CBS6412 | cds-NP_009684.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:469211-470698:- | gene-YBR126C_CBS6413 | rna-NM_001178474.1_CBS6413 | cds-NP_009684.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:482675-484162:- | gene-YBR126C_CENPK1137D | rna-NM_001178474.1_CENPK1137D | cds-NP_009684.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:597819-599306:- | gene-YBR126C_EthanolRed | rna-NM_001178474.1_EthanolRed | cds-NP_009684.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:487836-489323:- | gene-YBR126C_FaliES1 | rna-NM_001178474.1_FaliES1 | cds-NP_009684.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000444.1:11250-12737:- | gene-YBR126C_JAY291 | rna-NM_001178474.1_JAY291 | cds-NP_009684.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:476481-477968:- | gene-YBR126C_MUCL30387 | rna-NM_001178474.1_MUCL30387 | cds-NP_009684.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:474840-476327:- | gene-YBR126C_MUCL30388 | rna-NM_001178474.1_MUCL30388 | cds-NP_009684.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:461976-463463:- | gene-YBR126C_MUCL39482 | rna-NM_001178474.1_MUCL39482 | cds-NP_009684.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:471895-473382:- | gene-YBR126C_MUCL42920 | rna-NM_001178474.1_MUCL42920 | cds-NP_009684.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:488702-490189:- | gene-YBR126C_NCIM3186 | rna-NM_001178474.1_NCIM3186 | cds-NP_009684.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:464504-465991:- | gene-YBR126C_NCYC1407 | rna-NM_001178474.1_NCYC1407 | cds-NP_009684.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:477089-478576:- | gene-YBR126C_PE2H3 | rna-NM_001178474.1_PE2H3 | cds-NP_009684.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:474765-476252:- | gene-YBR126C_PE2H4 | rna-NM_001178474.1_PE2H4 | cds-NP_009684.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:488905-490392:- | gene-YBR126C_S288C | rna-NM_001178474.1_S288C | cds-NP_009684.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000032.1:10021-11508:- | gene-YBR126C_SA1 | rna-NM_001178474.1_SA1 | cds-NP_009684.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:486843-488330:- | gene-YBR126C_ThermosaccDry | rna-NM_001178474.1_ThermosaccDry | cds-NP_009684.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:468342-469829:- | gene-YBR126C_VR1 | rna-NM_001178474.1_VR1 | cds-NP_009684.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:461993-463480:- | gene-YBR126C_ZTW1 | rna-NM_001178474.1_ZTW1 | cds-NP_009684.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:499212-500699:- | gene-YBR126C_Sparadoxus | rna-NM_001178474.1_Sparadoxus | cds-NP_009684.1_Sparadoxus | 92.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |