Gene name: TPP1
Reference locus (S288C): YMR156C
Gene biotype: protein_coding
Description: DNA 3'-phosphatase; functions in repair of endogenous damage of double-stranded DNA, activity is specific for removal of 3' phosphates at strand breaks; similar to the l-2-haloacid dehalogenase superfamily; homolog of human polynucleotide kinase/3'-phosphatase
Top 10 interactors (score): TDP1 (0.993); APN2 (0.971); DNL4 (0.954); YKU70 (0.952); HIS4 (0.948); YKU80 (0.942); POL4 (0.919); EST3 (0.904); CDC9 (0.892); HNT3 (0.875); EST2 (0.875); EST1 (0.851); TAD1 (0.82); RAD10 (0.815); APN1 (0.799); TOP1 (0.795); OGG1 (0.782); CDC13 (0.775); PSO2 (0.765); RAD27 (0.762)
Homologues (species, bitscore): CG9601 (Drosophila melanogaster, 50.1); AT3G14890 (Arabidopsis thaliana, 53.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:609804-610520:- | gene-YMR156C_AKU4011 | rna-NM_001182659.1_AKU4011 | cds-NP_013877.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:62022-62738:+ | gene-YMR156C_BG1 | rna-NM_001182659.1_BG1 | cds-NP_013877.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:552972-553688:- | gene-YMR156C_Bruggeman | rna-NM_001182659.1_Bruggeman | cds-NP_013877.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:555192-555908:- | gene-YMR156C_CAT1 | rna-NM_001182659.1_CAT1 | cds-NP_013877.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:542728-543444:- | gene-YMR156C_CBS1585 | rna-NM_001182659.1_CBS1585 | cds-NP_013877.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:546601-547317:- | gene-YMR156C_CBS436 | rna-NM_001182659.1_CBS436 | cds-NP_013877.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:655346-656062:- | gene-YMR156C_CBS6412 | rna-NM_001182659.1_CBS6412 | cds-NP_013877.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:541279-541995:- | gene-YMR156C_CBS6413 | rna-NM_001182659.1_CBS6413 | cds-NP_013877.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:564810-565526:- | gene-YMR156C_CENPK1137D | rna-NM_001182659.1_CENPK1137D | cds-NP_013877.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:540894-541610:- | gene-YMR156C_EthanolRed | rna-NM_001182659.1_EthanolRed | cds-NP_013877.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:547893-548609:- | gene-YMR156C_FaliES1 | rna-NM_001182659.1_FaliES1 | cds-NP_013877.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000115.1:19740-20456:- | gene-YMR156C_JAY291 | rna-NM_001182659.1_JAY291 | cds-NP_013877.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:547697-548413:- | gene-YMR156C_MUCL30387 | rna-NM_001182659.1_MUCL30387 | cds-NP_013877.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:553221-553937:- | gene-YMR156C_MUCL30388 | rna-NM_001182659.1_MUCL30388 | cds-NP_013877.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:543415-544131:- | gene-YMR156C_MUCL39482 | rna-NM_001182659.1_MUCL39482 | cds-NP_013877.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:549706-550422:- | gene-YMR156C_MUCL42920 | rna-NM_001182659.1_MUCL42920 | cds-NP_013877.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:570254-570970:- | gene-YMR156C_NCIM3186 | rna-NM_001182659.1_NCIM3186 | cds-NP_013877.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:543118-543834:- | gene-YMR156C_NCYC1407 | rna-NM_001182659.1_NCYC1407 | cds-NP_013877.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:553494-554210:- | gene-YMR156C_PE2H3 | rna-NM_001182659.1_PE2H3 | cds-NP_013877.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:553952-554668:- | gene-YMR156C_PE2H4 | rna-NM_001182659.1_PE2H4 | cds-NP_013877.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:570300-571016:- | gene-YMR156C_S288C | rna-NM_001182659.1_S288C | cds-NP_013877.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000048.1:260-976:+ | gene-YMR156C_SA1 | rna-NM_001182659.1_SA1 | cds-NP_013877.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:543541-544257:- | gene-YMR156C_ThermosaccDry | rna-NM_001182659.1_ThermosaccDry | cds-NP_013877.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:556007-556723:- | gene-YMR156C_VR1 | rna-NM_001182659.1_VR1 | cds-NP_013877.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:518435-519151:- | gene-YMR156C_ZTW1 | rna-NM_001182659.1_ZTW1 | cds-NP_013877.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:554840-555556:- | gene-YMR156C_Sparadoxus | rna-NM_001182659.1_Sparadoxus | cds-NP_013877.1_Sparadoxus | 87.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |