Gene name: TPM2
Reference locus (S288C): YIL138C
Gene biotype: protein_coding
Description: Tropomyosin, fungi type; Tropomyosin-2; Minor isoform of tropomyosin; binds to and stabilizes actin cables and filaments, which direct polarized cell growth and the distribution of several organelles; appears to have distinct and also overlapping functions with Tpm1p; TPM2 has a paralog, TPM1, that arose from the whole genome duplication
Top 10 interactors (score): ACT1 (0.999); SAC6 (0.984); MYO1 (0.983); COF1 (0.983); PFY1 (0.977); MYO2 (0.96); BNR1 (0.958); BNI1 (0.944); ARP2 (0.941); AIP1 (0.934); SCP1 (0.886); TPM1 (0.885); MYO4 (0.864); MDM20 (0.859); IQG1 (0.835); ABP1 (0.831); LAS17 (0.827); MYO3 (0.816); MYO5 (0.814); ARP1 (0.791)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:90449-90934:- | gene-YIL138C_AKU4011 | rna-NM_001179486.3_AKU4011 | cds-NP_012128.3_AKU4011 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000174.1:46429-46914:+ | gene-YIL138C_BG1 | rna-NM_001179486.3_BG1 | cds-NP_012128.3_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:93206-93691:- | gene-YIL138C_Bruggeman | rna-NM_001179486.3_Bruggeman | cds-NP_012128.3_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:87018-87503:- | gene-YIL138C_CAT1 | rna-NM_001179486.3_CAT1 | cds-NP_012128.3_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:90652-91137:- | gene-YIL138C_CBS1585 | rna-NM_001179486.3_CBS1585 | cds-NP_012128.3_CBS1585 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:81791-82276:- | gene-YIL138C_CBS436 | rna-NM_001179486.3_CBS436 | cds-NP_012128.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:88182-88667:- | gene-YIL138C_CBS6412 | rna-NM_001179486.3_CBS6412 | cds-NP_012128.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:82337-82822:- | gene-YIL138C_CBS6413 | rna-NM_001179486.3_CBS6413 | cds-NP_012128.3_CBS6413 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:80932-81417:- | gene-YIL138C_CENPK1137D | rna-NM_001179486.3_CENPK1137D | cds-NP_012128.3_CENPK1137D | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:75985-76470:- | gene-YIL138C_EthanolRed | rna-NM_001179486.3_EthanolRed | cds-NP_012128.3_EthanolRed | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:91788-92273:- | gene-YIL138C_FaliES1 | rna-NM_001179486.3_FaliES1 | cds-NP_012128.3_FaliES1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000319.1:16082-16567:+ | gene-YIL138C_JAY291 | rna-NM_001179486.3_JAY291 | cds-NP_012128.3_JAY291 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:90968-91453:- | gene-YIL138C_MUCL30387 | rna-NM_001179486.3_MUCL30387 | cds-NP_012128.3_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:90646-91131:- | gene-YIL138C_MUCL30388 | rna-NM_001179486.3_MUCL30388 | cds-NP_012128.3_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:91578-92063:- | gene-YIL138C_MUCL39482 | rna-NM_001179486.3_MUCL39482 | cds-NP_012128.3_MUCL39482 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:94780-95265:- | gene-YIL138C_MUCL42920 | rna-NM_001179486.3_MUCL42920 | cds-NP_012128.3_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:89230-89715:- | gene-YIL138C_NCIM3186 | rna-NM_001179486.3_NCIM3186 | cds-NP_012128.3_NCIM3186 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:95543-96028:- | gene-YIL138C_NCYC1407 | rna-NM_001179486.3_NCYC1407 | cds-NP_012128.3_NCYC1407 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:90165-90650:- | gene-YIL138C_PE2H3 | rna-NM_001179486.3_PE2H3 | cds-NP_012128.3_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:84127-84612:- | gene-YIL138C_PE2H4 | rna-NM_001179486.3_PE2H4 | cds-NP_012128.3_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:89230-89715:- | gene-YIL138C_S288C | rna-NM_001179486.3_S288C | cds-NP_012128.3_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000050.1:67806-68291:- | gene-YIL138C_SA1 | rna-NM_001179486.3_SA1 | cds-NP_012128.3_SA1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:90398-90883:- | gene-YIL138C_ThermosaccDry | rna-NM_001179486.3_ThermosaccDry | cds-NP_012128.3_ThermosaccDry | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:87555-88040:- | gene-YIL138C_VR1 | rna-NM_001179486.3_VR1 | cds-NP_012128.3_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:65379-65864:- | gene-YIL138C_ZTW1 | rna-NM_001179486.3_ZTW1 | cds-NP_012128.3_ZTW1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:83199-83684:- | gene-YIL138C_Sparadoxus | rna-NM_001179486.3_Sparadoxus | cds-NP_012128.3_Sparadoxus | 91.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |