Gene name: TPM1
Reference locus (S288C): YNL079C
Gene biotype: protein_coding
Description: Tropomyosin, fungi type; Tropomyosin-1; Major isoform of tropomyosin; binds to and stabilizes actin cables and filaments, which direct polarized cell growth and the distribution of several organelles; acetylated by the NatB complex and acetylated form binds actin most efficiently; TPM1 has a paralog, TPM2, that arose from the whole genome duplication
Top 10 interactors (score): ACT1 (0.999); PFY1 (0.989); SAC6 (0.988); COF1 (0.987); MYO2 (0.983); BNI1 (0.982); MYO1 (0.973); BNR1 (0.97); MDM20 (0.964); ARP2 (0.942); AIP1 (0.932); TPM2 (0.885); ABP1 (0.878); CMD1 (0.858); SCP1 (0.853); SEC4 (0.851); LAS17 (0.838); MYO4 (0.838); MYO5 (0.835); BUD6 (0.833)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:472231-472830:- | gene-YNL079C_AKU4011 | rna-NM_001182917.1_AKU4011 | cds-NP_014320.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:376295-376894:- | gene-YNL079C_BG1 | rna-NM_001182917.1_BG1 | cds-NP_014320.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:482952-483551:- | gene-YNL079C_Bruggeman | rna-NM_001182917.1_Bruggeman | cds-NP_014320.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:525958-526557:- | gene-YNL079C_CAT1 | rna-NM_001182917.1_CAT1 | cds-NP_014320.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:472901-473500:- | gene-YNL079C_CBS1585 | rna-NM_001182917.1_CBS1585 | cds-NP_014320.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:541271-541870:- | gene-YNL079C_CBS436 | rna-NM_001182917.1_CBS436 | cds-NP_014320.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:467996-468595:- | gene-YNL079C_CBS6412 | rna-NM_001182917.1_CBS6412 | cds-NP_014320.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:469313-469912:- | gene-YNL079C_CBS6413 | rna-NM_001182917.1_CBS6413 | cds-NP_014320.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:472388-472987:- | gene-YNL079C_CENPK1137D | rna-NM_001182917.1_CENPK1137D | cds-NP_014320.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:475056-475655:- | gene-YNL079C_EthanolRed | rna-NM_001182917.1_EthanolRed | cds-NP_014320.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:465585-466184:- | gene-YNL079C_FaliES1 | rna-NM_001182917.1_FaliES1 | cds-NP_014320.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000317.1:7414-8013:+ | gene-YNL079C_JAY291 | rna-NM_001182917.1_JAY291 | cds-NP_014320.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:479128-479727:- | gene-YNL079C_MUCL30387 | rna-NM_001182917.1_MUCL30387 | cds-NP_014320.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:514501-515100:- | gene-YNL079C_MUCL30388 | rna-NM_001182917.1_MUCL30388 | cds-NP_014320.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:470305-470904:- | gene-YNL079C_MUCL39482 | rna-NM_001182917.1_MUCL39482 | cds-NP_014320.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:474223-474822:- | gene-YNL079C_MUCL42920 | rna-NM_001182917.1_MUCL42920 | cds-NP_014320.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:478535-479134:- | gene-YNL079C_NCIM3186 | rna-NM_001182917.1_NCIM3186 | cds-NP_014320.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:472353-472952:- | gene-YNL079C_NCYC1407 | rna-NM_001182917.1_NCYC1407 | cds-NP_014320.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:475591-476190:- | gene-YNL079C_PE2H3 | rna-NM_001182917.1_PE2H3 | cds-NP_014320.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:470666-471265:- | gene-YNL079C_PE2H4 | rna-NM_001182917.1_PE2H4 | cds-NP_014320.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:478566-479165:- | gene-YNL079C_S288C | rna-NM_001182917.1_S288C | cds-NP_014320.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000024.1:63525-64124:- | gene-YNL079C_SA1 | rna-NM_001182917.1_SA1 | cds-NP_014320.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:466460-467059:- | gene-YNL079C_ThermosaccDry | rna-NM_001182917.1_ThermosaccDry | cds-NP_014320.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:485574-486173:- | gene-YNL079C_VR1 | rna-NM_001182917.1_VR1 | cds-NP_014320.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:375809-376408:- | gene-YNL079C_ZTW1 | rna-NM_001182917.1_ZTW1 | cds-NP_014320.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:481974-482573:- | gene-YNL079C_Sparadoxus | rna-NM_001182917.1_Sparadoxus | cds-NP_014320.1_Sparadoxus | 94.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |