Gene name: TPH3
Reference locus (S288C): YJL016W
Gene biotype: protein_coding
Description: Uncharacterized protein YJL016W; Putative protein of unknown function; GFP-fusion protein localizes to the cytoplasm; contains two adjacent PH-like domains; conserved in closely related Saccharomyces species
Top 10 interactors (score): YPR089W (0.892); JIP4 (0.779); BBC1 (0.779); YIL054W (0.747); YHR173C (0.747); YKL033W-A (0.746); YNL140C (0.746); SKG1 (0.746); SWH1 (0.745); RBH1 (0.745); PTK1 (0.744); VTC4 (0.744); YOR105W (0.716); YER084W (0.715); ECM9 (0.714); YLR358C (0.713); RBH2 (0.705); N1795 (0.699); YNL184C (0.699); MPS3 (0.698)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:388738-390423:+ | gene-YJL016W_AKU4011 | rna-NM_001181450.1_AKU4011 | cds-NP_012518.2_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:223741-225426:- | gene-YJL016W_BG1 | rna-NM_001181450.1_BG1 | cds-NP_012518.2_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:402825-404510:+ | gene-YJL016W_Bruggeman | rna-NM_001181450.1_Bruggeman | cds-NP_012518.2_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:406805-408490:+ | gene-YJL016W_CAT1 | rna-NM_001181450.1_CAT1 | cds-NP_012518.2_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:400327-402012:+ | gene-YJL016W_CBS1585 | rna-NM_001181450.1_CBS1585 | cds-NP_012518.2_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:418701-420386:+ | gene-YJL016W_CBS436 | rna-NM_001181450.1_CBS436 | cds-NP_012518.2_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:388552-390237:+ | gene-YJL016W_CBS6412 | rna-NM_001181450.1_CBS6412 | cds-NP_012518.2_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:390767-392452:+ | gene-YJL016W_CBS6413 | rna-NM_001181450.1_CBS6413 | cds-NP_012518.2_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:388009-389694:+ | gene-YJL016W_CENPK1137D | rna-NM_001181450.1_CENPK1137D | cds-NP_012518.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:391611-393296:+ | gene-YJL016W_EthanolRed | rna-NM_001181450.1_EthanolRed | cds-NP_012518.2_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:404356-406041:+ | gene-YJL016W_FaliES1 | rna-NM_001181450.1_FaliES1 | cds-NP_012518.2_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000200.1:9548-11233:- | gene-YJL016W_JAY291 | rna-NM_001181450.1_JAY291 | cds-NP_012518.2_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:403164-404849:+ | gene-YJL016W_MUCL30387 | rna-NM_001181450.1_MUCL30387 | cds-NP_012518.2_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:399140-400825:+ | gene-YJL016W_MUCL30388 | rna-NM_001181450.1_MUCL30388 | cds-NP_012518.2_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:393644-395329:+ | gene-YJL016W_MUCL39482 | rna-NM_001181450.1_MUCL39482 | cds-NP_012518.2_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:399098-400783:+ | gene-YJL016W_MUCL42920 | rna-NM_001181450.1_MUCL42920 | cds-NP_012518.2_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:405567-407252:+ | gene-YJL016W_NCIM3186 | rna-NM_001181450.1_NCIM3186 | cds-NP_012518.2_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:391557-393242:+ | gene-YJL016W_NCYC1407 | rna-NM_001181450.1_NCYC1407 | cds-NP_012518.2_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:403705-405390:+ | gene-YJL016W_PE2H3 | rna-NM_001181450.1_PE2H3 | cds-NP_012518.2_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:403312-404997:+ | gene-YJL016W_PE2H4 | rna-NM_001181450.1_PE2H4 | cds-NP_012518.2_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:405588-407273:+ | gene-YJL016W_S288C | rna-NM_001181450.1_S288C | cds-NP_012518.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:201232-202917:+ | gene-YJL016W_SA1 | rna-NM_001181450.1_SA1 | cds-NP_012518.2_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:398015-399700:+ | gene-YJL016W_ThermosaccDry | rna-NM_001181450.1_ThermosaccDry | cds-NP_012518.2_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:399704-401389:+ | gene-YJL016W_VR1 | rna-NM_001181450.1_VR1 | cds-NP_012518.2_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:378513-380198:+ | gene-YJL016W_ZTW1 | rna-NM_001181450.1_ZTW1 | cds-NP_012518.2_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:404197-405882:+ | gene-YJL016W_Sparadoxus | rna-NM_001181450.1_Sparadoxus | cds-NP_012518.2_Sparadoxus | 90.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |