Gene name: TPD3
Reference locus (S288C): YAL016W
Gene biotype: protein_coding
Description: Regulatory subunit A of the heterotrimeric PP2A complex; the heterotrimeric protein phosphatase 2A (PP2A) complex also contains regulatory subunit Cdc55p and either catalytic subunit Pph21p or Pph22p; required for cell morphogenesis and transcription by RNA polymerase III
Top 10 interactors (score): CDC55 (0.999); PPH3 (0.999); PPH22 (0.999); RRD2 (0.999); PPH21 (0.999); RTS1 (0.999); SIT4 (0.998); PPG1 (0.998); RRD1 (0.997); FAR11 (0.997); PPM1 (0.995); PPE1 (0.994); YNL217W (0.992); FAR8 (0.991); GLC7 (0.986); ZDS2 (0.975); TAP42 (0.975); FAR10 (0.973); VPS64 (0.973); PSY2 (0.96)
Homologues (species, bitscore): PPP2R1B (Homo sapiens, 490.3); Ppp2r1a (Mus musculus, 484.6); ppp2r1a (Danio rerio, 478.4); ppp2r1b (Xenopus tropicalis, 445.7); Pp2A-29B (Drosophila melanogaster, 464.9); paa-1 (Caenorhabditis elegans, 427.6); PP2AA2 (Arabidopsis thaliana, 502.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005295.1:109990-111897:+ | gene-YAL016W_AKU4011 | rna-NM_001178161.1_AKU4011 | cds-NP_009386.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000070.1:96940-98847:+ | gene-YAL016W_BG1 | rna-NM_001178161.1_BG1 | cds-NP_009386.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:124863-126770:+ | gene-YAL016W_Bruggeman | rna-NM_001178161.1_Bruggeman | cds-NP_009386.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005519.1:111200-113107:+ | gene-YAL016W_CAT1 | rna-NM_001178161.1_CAT1 | cds-NP_009386.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005359.1:123007-124914:+ | gene-YAL016W_CBS1585 | rna-NM_001178161.1_CBS1585 | cds-NP_009386.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005343.1:123280-125187:+ | gene-YAL016W_CBS436 | rna-NM_001178161.1_CBS436 | cds-NP_009386.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:736096-738003:+ | gene-YAL016W_CBS6412 | rna-NM_001178161.1_CBS6412 | cds-NP_009386.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005311.1:121272-123179:+ | gene-YAL016W_CBS6413 | rna-NM_001178161.1_CBS6413 | cds-NP_009386.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001522.1:125037-126944:+ | gene-YAL016W_CENPK1137D | rna-NM_001178161.1_CENPK1137D | cds-NP_009386.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005471.1:111413-113320:+ | gene-YAL016W_EthanolRed | rna-NM_001178161.1_EthanolRed | cds-NP_009386.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005535.1:126037-127944:+ | gene-YAL016W_FaliES1 | rna-NM_001178161.1_FaliES1 | cds-NP_009386.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000084.1:97308-99215:+ | gene-YAL016W_JAY291 | rna-NM_001178161.1_JAY291 | cds-NP_009386.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005407.1:125990-127924:+ | gene-YAL016W_MUCL30387 | rna-NM_001178161.1_MUCL30387 | cds-NP_009386.1_MUCL30387 | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005439.1:123243-125168:+ | gene-YAL016W_MUCL30388 | rna-NM_001178161.1_MUCL30388 | cds-NP_009386.1_MUCL30388 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005279.1:121791-123698:+ | gene-YAL016W_MUCL39482 | rna-NM_001178161.1_MUCL39482 | cds-NP_009386.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:124168-126075:+ | gene-YAL016W_MUCL42920 | rna-NM_001178161.1_MUCL42920 | cds-NP_009386.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:124756-126663:+ | gene-YAL016W_NCIM3186 | rna-NM_001178161.1_NCIM3186 | cds-NP_009386.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005263.1:109678-111585:+ | gene-YAL016W_NCYC1407 | rna-NM_001178161.1_NCYC1407 | cds-NP_009386.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:111596-113503:+ | gene-YAL016W_PE2H3 | rna-NM_001178161.1_PE2H3 | cds-NP_009386.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:111315-113222:+ | gene-YAL016W_PE2H4 | rna-NM_001178161.1_PE2H4 | cds-NP_009386.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:124879-126786:+ | gene-YAL016W_S288C | rna-NM_001178161.1_S288C | cds-NP_009386.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000077.1:41748-43655:+ | gene-YAL016W_SA1 | rna-NM_001178161.1_SA1 | cds-NP_009386.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005487.1:125550-127457:+ | gene-YAL016W_ThermosaccDry | rna-NM_001178161.1_ThermosaccDry | cds-NP_009386.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005455.1:126838-128745:+ | gene-YAL016W_VR1 | rna-NM_001178161.1_VR1 | cds-NP_009386.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000002.1:97358-99265:+ | gene-YAL016W_ZTW1 | rna-NM_001178161.1_ZTW1 | cds-NP_009386.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047487.1:114884-116782:+ | gene-YAL016W_Sparadoxus | rna-NM_001178161.1_Sparadoxus | cds-NP_009386.1_Sparadoxus | 92.2 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |