Gene name: TOD6
Reference locus (S288C): YBL054W
Gene biotype: protein_coding
Description: Transcriptional regulatory protein TOD6; PAC motif binding protein involved in rRNA and ribosome biogenesis; subunit of the RPD3L histone deacetylase complex; Myb-like HTH transcription factor; hypophosphorylated by rapamycin treatment in a Sch9p-dependent manner; activated in stochastic pulses of nuclear localization; Belongs to the DOT6 family
Top 10 interactors (score): RPD3 (0.965); REI1 (0.951); SDS3 (0.949); STB3 (0.949); DOT6 (0.945); CTI6 (0.941); SAP30 (0.93); UME6 (0.929); PHO23 (0.929); RXT2 (0.925); UME1 (0.921); RXT3 (0.915); SYO1 (0.914); TRM2 (0.91); ASH1 (0.906); PUF6 (0.905); DEP1 (0.904); DHR2 (0.904); SET3 (0.903); SIF2 (0.9)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:111169-112746:+ | gene-YBL054W_AKU4011 | rna-NM_001178294.1_AKU4011 | cds-NP_009499.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:102022-103596:+ | gene-YBL054W_BG1 | rna-NM_001178294.1_BG1 | cds-NP_009499.1_BG1 | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:111782-113359:+ | gene-YBL054W_Bruggeman | rna-NM_001178294.1_Bruggeman | cds-NP_009499.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:114422-115996:+ | gene-YBL054W_CAT1 | rna-NM_001178294.1_CAT1 | cds-NP_009499.1_CAT1 | 99.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:103736-105313:+ | gene-YBL054W_CBS1585 | rna-NM_001178294.1_CBS1585 | cds-NP_009499.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:112243-113820:+ | gene-YBL054W_CBS436 | rna-NM_001178294.1_CBS436 | cds-NP_009499.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:102241-103818:+ | gene-YBL054W_CBS6412 | rna-NM_001178294.1_CBS6412 | cds-NP_009499.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:109314-110891:+ | gene-YBL054W_CBS6413 | rna-NM_001178294.1_CBS6413 | cds-NP_009499.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:111354-112931:+ | gene-YBL054W_CENPK1137D | rna-NM_001178294.1_CENPK1137D | cds-NP_009499.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:125169-126746:+ | gene-YBL054W_EthanolRed | rna-NM_001178294.1_EthanolRed | cds-NP_009499.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:126022-127599:+ | gene-YBL054W_FaliES1 | rna-NM_001178294.1_FaliES1 | cds-NP_009499.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000072.1:28636-30213:+ | gene-YBL054W_JAY291 | rna-NM_001178294.1_JAY291 | cds-NP_009499.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:111155-112732:+ | gene-YBL054W_MUCL30387 | rna-NM_001178294.1_MUCL30387 | cds-NP_009499.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:112433-114010:+ | gene-YBL054W_MUCL30388 | rna-NM_001178294.1_MUCL30388 | cds-NP_009499.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:103916-105493:+ | gene-YBL054W_MUCL39482 | rna-NM_001178294.1_MUCL39482 | cds-NP_009499.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:110751-112328:+ | gene-YBL054W_MUCL42920 | rna-NM_001178294.1_MUCL42920 | cds-NP_009499.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:117386-118963:+ | gene-YBL054W_NCIM3186 | rna-NM_001178294.1_NCIM3186 | cds-NP_009499.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:105059-106636:+ | gene-YBL054W_NCYC1407 | rna-NM_001178294.1_NCYC1407 | cds-NP_009499.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:111312-112889:+ | gene-YBL054W_PE2H3 | rna-NM_001178294.1_PE2H3 | cds-NP_009499.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:108956-110533:+ | gene-YBL054W_PE2H4 | rna-NM_001178294.1_PE2H4 | cds-NP_009499.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:117589-119166:+ | gene-YBL054W_S288C | rna-NM_001178294.1_S288C | cds-NP_009499.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000051.1:2167-3744:+ | gene-YBL054W_SA1 | rna-NM_001178294.1_SA1 | cds-NP_009499.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:125983-127560:+ | gene-YBL054W_ThermosaccDry | rna-NM_001178294.1_ThermosaccDry | cds-NP_009499.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:108148-109725:+ | gene-YBL054W_VR1 | rna-NM_001178294.1_VR1 | cds-NP_009499.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:102693-104270:+ | gene-YBL054W_ZTW1 | rna-NM_001178294.1_ZTW1 | cds-NP_009499.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:137406-138983:+ | gene-YBL054W_Sparadoxus | rna-NM_001178294.1_Sparadoxus | cds-NP_009499.1_Sparadoxus | 88.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |