Gene name: TMS1
Reference locus (S288C): YDR105C
Gene biotype: protein_coding
Description: Serine incorporator 1/3; Vacuolar membrane protein of unknown function; is conserved in mammals; predicted to contain eleven transmembrane helices; interacts with Pdr5p, a protein involved in multidrug resistance
Top 10 interactors (score): AVT5 (0.756); KXD1 (0.751); SNA2 (0.749); CNL1 (0.745); TVP38 (0.717); LDB18 (0.7); YGL199C (0.694); TDA5 (0.694); EOS1 (0.692); GVP36 (0.657); TED1 (0.65); TRM2 (0.623); MIT1 (0.617); PMS1 (0.594); DCR2 (0.586); FUN30 (0.573); AVT6 (0.561); MVB12 (0.557); GPI14 (0.536); PEX7 (0.527)
Homologues (species, bitscore): SERINC3 (Homo sapiens, 208.8); Serinc1 (Mus musculus, 191.0); serinc1 (Danio rerio, 190.3); serinc1 (Xenopus tropicalis, 191.0); TMS1 (Drosophila melanogaster, 142.1); Y57E12AL.1 (Caenorhabditis elegans, 172.2); AT3G06170 (Arabidopsis thaliana, 159.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:636627-638048:- | gene-YDR105C_AKU4011 | rna-NM_001180413.3_AKU4011 | cds-NP_010390.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:486865-488286:+ | gene-YDR105C_BG1 | rna-NM_001180413.3_BG1 | cds-NP_010390.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:668714-670135:- | gene-YDR105C_Bruggeman | rna-NM_001180413.3_Bruggeman | cds-NP_010390.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:654588-656009:- | gene-YDR105C_CAT1 | rna-NM_001180413.3_CAT1 | cds-NP_010390.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:627646-629067:- | gene-YDR105C_CBS1585 | rna-NM_001180413.3_CBS1585 | cds-NP_010390.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:653047-654468:- | gene-YDR105C_CBS436 | rna-NM_001180413.3_CBS436 | cds-NP_010390.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:624061-625482:- | gene-YDR105C_CBS6412 | rna-NM_001180413.3_CBS6412 | cds-NP_010390.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:652592-654013:- | gene-YDR105C_CBS6413 | rna-NM_001180413.3_CBS6413 | cds-NP_010390.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:658108-659529:- | gene-YDR105C_CENPK1137D | rna-NM_001180413.3_CENPK1137D | cds-NP_010390.3_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:638410-639831:- | gene-YDR105C_EthanolRed | rna-NM_001180413.3_EthanolRed | cds-NP_010390.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:645204-646625:- | gene-YDR105C_FaliES1 | rna-NM_001180413.3_FaliES1 | cds-NP_010390.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000125.1:13873-15294:- | gene-YDR105C_JAY291 | rna-NM_001180413.3_JAY291 | cds-NP_010390.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:654622-656043:- | gene-YDR105C_MUCL30387 | rna-NM_001180413.3_MUCL30387 | cds-NP_010390.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:643644-645065:- | gene-YDR105C_MUCL30388 | rna-NM_001180413.3_MUCL30388 | cds-NP_010390.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:629016-630437:- | gene-YDR105C_MUCL39482 | rna-NM_001180413.3_MUCL39482 | cds-NP_010390.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:566964-568385:- | gene-YDR105C_MUCL42920 | rna-NM_001180413.3_MUCL42920 | cds-NP_010390.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:665272-666693:- | gene-YDR105C_NCIM3186 | rna-NM_001180413.3_NCIM3186 | cds-NP_010390.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:627927-629348:- | gene-YDR105C_NCYC1407 | rna-NM_001180413.3_NCYC1407 | cds-NP_010390.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:647740-649161:- | gene-YDR105C_PE2H3 | rna-NM_001180413.3_PE2H3 | cds-NP_010390.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:647045-648466:- | gene-YDR105C_PE2H4 | rna-NM_001180413.3_PE2H4 | cds-NP_010390.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:665349-666770:- | gene-YDR105C_S288C | rna-NM_001180413.3_S288C | cds-NP_010390.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:13954-15375:- | gene-YDR105C_SA1 | rna-NM_001180413.3_SA1 | cds-NP_010390.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:644733-646154:- | gene-YDR105C_ThermosaccDry | rna-NM_001180413.3_ThermosaccDry | cds-NP_010390.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:657655-659076:- | gene-YDR105C_VR1 | rna-NM_001180413.3_VR1 | cds-NP_010390.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:642318-643739:- | gene-YDR105C_ZTW1 | rna-NM_001180413.3_ZTW1 | cds-NP_010390.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:647000-648424:- | gene-YDR105C_Sparadoxus | rna-NM_001180413.3_Sparadoxus | cds-NP_010390.3_Sparadoxus | 91.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |