TMS1 (YDR105C)


Gene profile

Gene name: TMS1
Reference locus (S288C): YDR105C
Gene biotype: protein_coding

Description: Serine incorporator 1/3; Vacuolar membrane protein of unknown function; is conserved in mammals; predicted to contain eleven transmembrane helices; interacts with Pdr5p, a protein involved in multidrug resistance

Top 10 interactors (score): AVT5 (0.756); KXD1 (0.751); SNA2 (0.749); CNL1 (0.745); TVP38 (0.717); LDB18 (0.7); YGL199C (0.694); TDA5 (0.694); EOS1 (0.692); GVP36 (0.657); TED1 (0.65); TRM2 (0.623); MIT1 (0.617); PMS1 (0.594); DCR2 (0.586); FUN30 (0.573); AVT6 (0.561); MVB12 (0.557); GPI14 (0.536); PEX7 (0.527)

Homologues (species, bitscore): SERINC3 (Homo sapiens, 208.8); Serinc1 (Mus musculus, 191.0); serinc1 (Danio rerio, 190.3); serinc1 (Xenopus tropicalis, 191.0); TMS1 (Drosophila melanogaster, 142.1); Y57E12AL.1 (Caenorhabditis elegans, 172.2); AT3G06170 (Arabidopsis thaliana, 159.8)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005298.1:636627-638048:- gene-YDR105C_AKU4011 rna-NM_001180413.3_AKU4011 cds-NP_010390.3_AKU4011 99.7 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000080.1:486865-488286:+ gene-YDR105C_BG1 rna-NM_001180413.3_BG1 cds-NP_010390.3_BG1 99.9 100.0 Verified 1 1 1 True True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005506.1:668714-670135:- gene-YDR105C_Bruggeman rna-NM_001180413.3_Bruggeman cds-NP_010390.3_Bruggeman 99.6 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005522.1:654588-656009:- gene-YDR105C_CAT1 rna-NM_001180413.3_CAT1 cds-NP_010390.3_CAT1 99.9 100.0 Verified 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005362.1:627646-629067:- gene-YDR105C_CBS1585 rna-NM_001180413.3_CBS1585 cds-NP_010390.3_CBS1585 99.7 100.0 Verified 1 1 1 True True False False False
CBS436 GCA_001738355.1 Sake Asia CM005346.1:653047-654468:- gene-YDR105C_CBS436 rna-NM_001180413.3_CBS436 cds-NP_010390.3_CBS436 99.8 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005330.1:624061-625482:- gene-YDR105C_CBS6412 rna-NM_001180413.3_CBS6412 cds-NP_010390.3_CBS6412 99.7 100.0 Mismatch 1 1 1 True True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005314.1:652592-654013:- gene-YDR105C_CBS6413 rna-NM_001180413.3_CBS6413 cds-NP_010390.3_CBS6413 99.7 100.0 Verified 1 1 1 True True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001525.1:658108-659529:- gene-YDR105C_CENPK1137D rna-NM_001180413.3_CENPK1137D cds-NP_010390.3_CENPK1137D 99.6 100.0 Verified 1 1 1 False True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005474.1:638410-639831:- gene-YDR105C_EthanolRed rna-NM_001180413.3_EthanolRed cds-NP_010390.3_EthanolRed 99.7 100.0 Verified 1 1 1 True True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005538.1:645204-646625:- gene-YDR105C_FaliES1 rna-NM_001180413.3_FaliES1 cds-NP_010390.3_FaliES1 99.7 100.0 Verified 1 1 1 True True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000125.1:13873-15294:- gene-YDR105C_JAY291 rna-NM_001180413.3_JAY291 cds-NP_010390.3_JAY291 99.6 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005410.1:654622-656043:- gene-YDR105C_MUCL30387 rna-NM_001180413.3_MUCL30387 cds-NP_010390.3_MUCL30387 99.6 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005442.1:643644-645065:- gene-YDR105C_MUCL30388 rna-NM_001180413.3_MUCL30388 cds-NP_010390.3_MUCL30388 99.6 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005282.1:629016-630437:- gene-YDR105C_MUCL39482 rna-NM_001180413.3_MUCL39482 cds-NP_010390.3_MUCL39482 99.7 100.0 Verified 1 1 1 True True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005426.1:566964-568385:- gene-YDR105C_MUCL42920 rna-NM_001180413.3_MUCL42920 cds-NP_010390.3_MUCL42920 99.7 100.0 Verified 1 1 1 True True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011813.1:665272-666693:- gene-YDR105C_NCIM3186 rna-NM_001180413.3_NCIM3186 cds-NP_010390.3_NCIM3186 99.6 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005266.1:627927-629348:- gene-YDR105C_NCYC1407 rna-NM_001180413.3_NCYC1407 cds-NP_010390.3_NCYC1407 99.7 100.0 Verified 1 1 1 True True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994143.1:647740-649161:- gene-YDR105C_PE2H3 rna-NM_001180413.3_PE2H3 cds-NP_010390.3_PE2H3 99.6 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999875.1:647045-648466:- gene-YDR105C_PE2H4 rna-NM_001180413.3_PE2H4 cds-NP_010390.3_PE2H4 99.6 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001136.10:665349-666770:- gene-YDR105C_S288C rna-NM_001180413.3_S288C cds-NP_010390.3_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000009.1:13954-15375:- gene-YDR105C_SA1 rna-NM_001180413.3_SA1 cds-NP_010390.3_SA1 99.6 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005490.1:644733-646154:- gene-YDR105C_ThermosaccDry rna-NM_001180413.3_ThermosaccDry cds-NP_010390.3_ThermosaccDry 99.7 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005458.1:657655-659076:- gene-YDR105C_VR1 rna-NM_001180413.3_VR1 cds-NP_010390.3_VR1 99.9 100.0 Verified 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000006.1:642318-643739:- gene-YDR105C_ZTW1 rna-NM_001180413.3_ZTW1 cds-NP_010390.3_ZTW1 99.7 100.0 Verified 1 1 1 True True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047490.1:647000-648424:- gene-YDR105C_Sparadoxus rna-NM_001180413.3_Sparadoxus cds-NP_010390.3_Sparadoxus 91.1 100.0 Verified 1 1 1 False True False False False

Additional files