Gene name: TMN3
Reference locus (S288C): YER113C
Gene biotype: protein_coding
Description: Transmembrane 9 superfamily member 3; Protein with a role in cellular adhesion and filamentous growth; similar to Emp70p and Tmn2p; member of Transmembrane Nine family with 9 transmembrane segments; localizes to Golgi; induced by 8-methoxypsoralen plus UVA irradiation
Top 10 interactors (score): LPP1 (0.92); YEL008W (0.811); YER135C (0.71); PUG1 (0.652); APD1 (0.65); YEA6 (0.622); LSM4 (0.581); ALT1 (0.571); CCT7 (0.568); MRH1 (0.526); MNN5 (0.526); DSE1 (0.523); ERV25 (0.514); TMN2 (0.507); FRM2 (0.499); MIT1 (0.489); EMP70 (0.477); MXR1 (0.453); RPL23A (0.45); COM2 (0.45)
Homologues (species, bitscore): TM9SF4 (Homo sapiens, 221.9); Tm9sf4 (Mus musculus, 220.3); tm9sf4 (Danio rerio, 210.3); ENSXETP00000007529 (Xenopus tropicalis, 199.9); TM9SF4 (Drosophila melanogaster, 210.3); ZK858.6 (Caenorhabditis elegans, 208.0); AT2G24170 (Arabidopsis thaliana, 234.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:381808-383928:- | gene-YER113C_AKU4011 | rna-NM_001179003.3_AKU4011 | cds-NP_011038.3_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:41689-43809:+ | gene-YER113C_BG1 | rna-NM_001179003.3_BG1 | cds-NP_011038.3_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:392283-394403:- | gene-YER113C_Bruggeman | rna-NM_001179003.3_Bruggeman | cds-NP_011038.3_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:386831-388951:- | gene-YER113C_CAT1 | rna-NM_001179003.3_CAT1 | cds-NP_011038.3_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:381203-383323:- | gene-YER113C_CBS1585 | rna-NM_001179003.3_CBS1585 | cds-NP_011038.3_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:383913-386033:- | gene-YER113C_CBS436 | rna-NM_001179003.3_CBS436 | cds-NP_011038.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:380283-382403:- | gene-YER113C_CBS6412 | rna-NM_001179003.3_CBS6412 | cds-NP_011038.3_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:387125-389245:- | gene-YER113C_CBS6413 | rna-NM_001179003.3_CBS6413 | cds-NP_011038.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:385675-387795:- | gene-YER113C_CENPK1137D | rna-NM_001179003.3_CENPK1137D | cds-NP_011038.3_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:381657-383777:- | gene-YER113C_EthanolRed | rna-NM_001179003.3_EthanolRed | cds-NP_011038.3_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:382138-384258:- | gene-YER113C_FaliES1 | rna-NM_001179003.3_FaliES1 | cds-NP_011038.3_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000174.1:7283-9403:+ | gene-YER113C_JAY291 | rna-NM_001179003.3_JAY291 | cds-NP_011038.3_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:389232-391352:- | gene-YER113C_MUCL30387 | rna-NM_001179003.3_MUCL30387 | cds-NP_011038.3_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:384177-386297:- | gene-YER113C_MUCL30388 | rna-NM_001179003.3_MUCL30388 | cds-NP_011038.3_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:380228-382348:- | gene-YER113C_MUCL39482 | rna-NM_001179003.3_MUCL39482 | cds-NP_011038.3_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:388724-390844:- | gene-YER113C_MUCL42920 | rna-NM_001179003.3_MUCL42920 | cds-NP_011038.3_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:387931-390051:- | gene-YER113C_NCIM3186 | rna-NM_001179003.3_NCIM3186 | cds-NP_011038.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:385761-387881:- | gene-YER113C_NCYC1407 | rna-NM_001179003.3_NCYC1407 | cds-NP_011038.3_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:396309-398429:- | gene-YER113C_PE2H3 | rna-NM_001179003.3_PE2H3 | cds-NP_011038.3_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:386250-388370:- | gene-YER113C_PE2H4 | rna-NM_001179003.3_PE2H4 | cds-NP_011038.3_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:387932-390052:- | gene-YER113C_S288C | rna-NM_001179003.3_S288C | cds-NP_011038.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:97541-99661:- | gene-YER113C_SA1 | rna-NM_001179003.3_SA1 | cds-NP_011038.3_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:382936-385056:- | gene-YER113C_ThermosaccDry | rna-NM_001179003.3_ThermosaccDry | cds-NP_011038.3_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:383995-386115:- | gene-YER113C_VR1 | rna-NM_001179003.3_VR1 | cds-NP_011038.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:380052-382172:- | gene-YER113C_ZTW1 | rna-NM_001179003.3_ZTW1 | cds-NP_011038.3_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:383970-386090:- | gene-YER113C_Sparadoxus | rna-NM_001179003.3_Sparadoxus | cds-NP_011038.3_Sparadoxus | 90.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |