Gene name: TMA64
Reference locus (S288C): YDR117C
Gene biotype: protein_coding
Description: Translation machinery-associated protein 64; Protein of unknown function that associates with ribosomes; has a putative RNA binding domain; in mammals the corresponding protein, eIF2D, has been shown to possess translation initiation factor activity
Top 10 interactors (score): TMA22 (0.99); TMA20 (0.977); SUI1 (0.96); RLI1 (0.957); RPS4B (0.891); FUN12 (0.875); RPS30B (0.768); YMR122W-A (0.745); DED1 (0.727); YOR131C (0.713); RPS20 (0.707); RPS13 (0.701); ASC1 (0.698); RPS4A (0.695); YOR019W (0.69); NOP1 (0.665); EFT1 (0.661); EFT2 (0.661); RPS2 (0.656); RPS5 (0.65)
Homologues (species, bitscore): EIF2D (Homo sapiens, 129.8); Eif2d (Mus musculus, 142.5); eif2d (Danio rerio, 108.6); eif2d (Xenopus tropicalis, 107.1); ligatin (Drosophila melanogaster, 78.6); eif-2D (Caenorhabditis elegans, 93.6); AT1G71350 (Arabidopsis thaliana, 134.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:654891-656588:- | gene-YDR117C_AKU4011 | rna-NM_001180425.3_AKU4011 | cds-NP_010402.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:468298-469995:+ | gene-YDR117C_BG1 | rna-NM_001180425.3_BG1 | cds-NP_010402.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:686951-688648:- | gene-YDR117C_Bruggeman | rna-NM_001180425.3_Bruggeman | cds-NP_010402.3_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:673680-675377:- | gene-YDR117C_CAT1 | rna-NM_001180425.3_CAT1 | cds-NP_010402.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:645929-647626:- | gene-YDR117C_CBS1585 | rna-NM_001180425.3_CBS1585 | cds-NP_010402.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:671803-673500:- | gene-YDR117C_CBS436 | rna-NM_001180425.3_CBS436 | cds-NP_010402.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:642281-643978:- | gene-YDR117C_CBS6412 | rna-NM_001180425.3_CBS6412 | cds-NP_010402.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:671257-672954:- | gene-YDR117C_CBS6413 | rna-NM_001180425.3_CBS6413 | cds-NP_010402.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:676389-678086:- | gene-YDR117C_CENPK1137D | rna-NM_001180425.3_CENPK1137D | cds-NP_010402.3_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:656658-658355:- | gene-YDR117C_EthanolRed | rna-NM_001180425.3_EthanolRed | cds-NP_010402.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:663452-665149:- | gene-YDR117C_FaliES1 | rna-NM_001180425.3_FaliES1 | cds-NP_010402.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000002.1:15561-17258:- | gene-YDR117C_JAY291 | rna-NM_001180425.3_JAY291 | cds-NP_010402.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:672876-674573:- | gene-YDR117C_MUCL30387 | rna-NM_001180425.3_MUCL30387 | cds-NP_010402.3_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:661894-663591:- | gene-YDR117C_MUCL30388 | rna-NM_001180425.3_MUCL30388 | cds-NP_010402.3_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:647270-648967:- | gene-YDR117C_MUCL39482 | rna-NM_001180425.3_MUCL39482 | cds-NP_010402.3_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:585236-586933:- | gene-YDR117C_MUCL42920 | rna-NM_001180425.3_MUCL42920 | cds-NP_010402.3_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:683869-685566:- | gene-YDR117C_NCIM3186 | rna-NM_001180425.3_NCIM3186 | cds-NP_010402.3_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:646675-648372:- | gene-YDR117C_NCYC1407 | rna-NM_001180425.3_NCYC1407 | cds-NP_010402.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:665992-667689:- | gene-YDR117C_PE2H3 | rna-NM_001180425.3_PE2H3 | cds-NP_010402.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:665297-666994:- | gene-YDR117C_PE2H4 | rna-NM_001180425.3_PE2H4 | cds-NP_010402.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:683946-685643:- | gene-YDR117C_S288C | rna-NM_001180425.3_S288C | cds-NP_010402.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:32608-34305:- | gene-YDR117C_SA1 | rna-NM_001180425.3_SA1 | cds-NP_010402.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:662974-664671:- | gene-YDR117C_ThermosaccDry | rna-NM_001180425.3_ThermosaccDry | cds-NP_010402.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:676302-677999:- | gene-YDR117C_VR1 | rna-NM_001180425.3_VR1 | cds-NP_010402.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:660563-662260:- | gene-YDR117C_ZTW1 | rna-NM_001180425.3_ZTW1 | cds-NP_010402.3_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:664981-666678:- | gene-YDR117C_Sparadoxus | rna-NM_001180425.3_Sparadoxus | cds-NP_010402.3_Sparadoxus | 87.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |