Gene name: TMA23
Reference locus (S288C): YMR269W
Gene biotype: protein_coding
Description: Nucleolar protein tma23; Nucleolar protein implicated in ribosome biogenesis; deletion extends chronological lifespan
Top 10 interactors (score): DRS1 (0.964); MAK16 (0.933); SPB1 (0.915); NOP7 (0.912); PNO1 (0.891); NOP53 (0.891); ENP1 (0.887); KRR1 (0.861); RRP14 (0.861); DBP10 (0.857); CGR1 (0.857); YNL050C (0.826); STU2 (0.821); NDC80 (0.82); PAC1 (0.82); BUB3 (0.819); SEC13 (0.819); NOP16 (0.802); EST2 (0.802); NOP4 (0.791)
Homologues (species, bitscore): SON (Homo sapiens, 53.9); Son (Mus musculus, 52.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:843914-844546:+ | gene-YMR269W_AKU4011 | rna-NM_001182776.1_AKU4011 | cds-NP_013996.2_AKU4011 | 98.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:109847-110485:- | gene-YMR269W_BG1 | rna-NM_001182776.1_BG1 | cds-NP_013996.2_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:789123-789758:+ | gene-YMR269W_Bruggeman | rna-NM_001182776.1_Bruggeman | cds-NP_013996.2_Bruggeman | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:792146-792784:+ | gene-YMR269W_CAT1 | rna-NM_001182776.1_CAT1 | cds-NP_013996.2_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:776164-776796:+ | gene-YMR269W_CBS1585 | rna-NM_001182776.1_CBS1585 | cds-NP_013996.2_CBS1585 | 98.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:798092-798727:+ | gene-YMR269W_CBS436 | rna-NM_001182776.1_CBS436 | cds-NP_013996.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:887719-888351:+ | gene-YMR269W_CBS6412 | rna-NM_001182776.1_CBS6412 | cds-NP_013996.2_CBS6412 | 98.1 | 99.5 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:775266-775898:+ | gene-YMR269W_CBS6413 | rna-NM_001182776.1_CBS6413 | cds-NP_013996.2_CBS6413 | 98.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:798867-799499:+ | gene-YMR269W_CENPK1137D | rna-NM_001182776.1_CENPK1137D | cds-NP_013996.2_CENPK1137D | 98.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:836602-837234:+ | gene-YMR269W_EthanolRed | rna-NM_001182776.1_EthanolRed | cds-NP_013996.2_EthanolRed | 98.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:782629-783261:+ | gene-YMR269W_FaliES1 | rna-NM_001182776.1_FaliES1 | cds-NP_013996.2_FaliES1 | 98.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:3272-3907:- | gene-YMR269W_JAY291 | rna-NM_001182776.1_JAY291 | cds-NP_013996.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:782972-783584:+ | gene-YMR269W_MUCL30387 | rna-NM_001182776.1_MUCL30387 | cds-NP_013996.2_MUCL30387 | 94.9 | 96.3 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:792340-792975:+ | gene-YMR269W_MUCL30388 | rna-NM_001182776.1_MUCL30388 | cds-NP_013996.2_MUCL30388 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:777252-777884:+ | gene-YMR269W_MUCL39482 | rna-NM_001182776.1_MUCL39482 | cds-NP_013996.2_MUCL39482 | 98.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:785300-785932:+ | gene-YMR269W_MUCL42920 | rna-NM_001182776.1_MUCL42920 | cds-NP_013996.2_MUCL42920 | 98.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:804410-805045:+ | gene-YMR269W_NCIM3186 | rna-NM_001182776.1_NCIM3186 | cds-NP_013996.2_NCIM3186 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:776876-777508:+ | gene-YMR269W_NCYC1407 | rna-NM_001182776.1_NCYC1407 | cds-NP_013996.2_NCYC1407 | 98.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:786865-787500:+ | gene-YMR269W_PE2H3 | rna-NM_001182776.1_PE2H3 | cds-NP_013996.2_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:787934-788572:+ | gene-YMR269W_PE2H4 | rna-NM_001182776.1_PE2H4 | cds-NP_013996.2_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:804456-805091:+ | gene-YMR269W_S288C | rna-NM_001182776.1_S288C | cds-NP_013996.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:3344-3979:- | gene-YMR269W_SA1 | rna-NM_001182776.1_SA1 | cds-NP_013996.2_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:778798-779430:+ | gene-YMR269W_ThermosaccDry | rna-NM_001182776.1_ThermosaccDry | cds-NP_013996.2_ThermosaccDry | 98.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:791402-792040:+ | gene-YMR269W_VR1 | rna-NM_001182776.1_VR1 | cds-NP_013996.2_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:193998-194630:+ | gene-YMR269W_ZTW1 | rna-NM_001182776.1_ZTW1 | cds-NP_013996.2_ZTW1 | 98.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:797239-797874:+ | gene-YMR269W_Sparadoxus | rna-NM_001182776.1_Sparadoxus | cds-NP_013996.2_Sparadoxus | 86.4 | 98.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |