Gene name: TMA22
Reference locus (S288C): YJR014W
Gene biotype: protein_coding
Description: Translation machinery-associated protein 22; Protein of unknown function; associates with ribosomes and has a putative RNA binding domain; interacts with Tma20p; similar to human GRAP and human DRP1, which interacts with human Tma20p homolog MCT-1; protein abundance increases in response to DNA replication stress; Belongs to the DENR family
Top 10 interactors (score): TMA20 (0.999); TMA64 (0.99); RPS13 (0.963); RPS31 (0.962); TIF35 (0.943); SUI2 (0.935); RPG1 (0.931); RLI1 (0.929); FIS1 (0.901); SUI3 (0.847); ASC1 (0.841); TIF5 (0.838); CDC33 (0.837); TIF11 (0.826); NIP1 (0.794); FUN12 (0.79); SUI1 (0.766); TIF4632 (0.762); TIF4631 (0.761); MIC19 (0.738)
Homologues (species, bitscore): DENR (Homo sapiens, 99.4); Denr (Mus musculus, 99.0); denr (Danio rerio, 96.7); denr (Xenopus tropicalis, 95.1); CG9099 (Drosophila melanogaster, 91.3); Y47D3A.21 (Caenorhabditis elegans, 90.5); AT5G11900 (Arabidopsis thaliana, 107.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:444983-445579:+ | gene-YJR014W_AKU4011 | rna-NM_001181672.1_AKU4011 | cds-NP_012548.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:167154-167750:- | gene-YJR014W_BG1 | rna-NM_001181672.1_BG1 | cds-NP_012548.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:459075-459671:+ | gene-YJR014W_Bruggeman | rna-NM_001181672.1_Bruggeman | cds-NP_012548.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:463016-463612:+ | gene-YJR014W_CAT1 | rna-NM_001181672.1_CAT1 | cds-NP_012548.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:456572-457168:+ | gene-YJR014W_CBS1585 | rna-NM_001181672.1_CBS1585 | cds-NP_012548.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:475545-476141:+ | gene-YJR014W_CBS436 | rna-NM_001181672.1_CBS436 | cds-NP_012548.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:444802-445398:+ | gene-YJR014W_CBS6412 | rna-NM_001181672.1_CBS6412 | cds-NP_012548.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:447025-447621:+ | gene-YJR014W_CBS6413 | rna-NM_001181672.1_CBS6413 | cds-NP_012548.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:444313-444909:+ | gene-YJR014W_CENPK1137D | rna-NM_001181672.1_CENPK1137D | cds-NP_012548.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:449966-450562:+ | gene-YJR014W_EthanolRed | rna-NM_001181672.1_EthanolRed | cds-NP_012548.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:461182-461778:+ | gene-YJR014W_FaliES1 | rna-NM_001181672.1_FaliES1 | cds-NP_012548.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000384.1:7422-8018:+ | gene-YJR014W_JAY291 | rna-NM_001181672.1_JAY291 | cds-NP_012548.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:459390-459986:+ | gene-YJR014W_MUCL30387 | rna-NM_001181672.1_MUCL30387 | cds-NP_012548.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:455927-456523:+ | gene-YJR014W_MUCL30388 | rna-NM_001181672.1_MUCL30388 | cds-NP_012548.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:450026-450622:+ | gene-YJR014W_MUCL39482 | rna-NM_001181672.1_MUCL39482 | cds-NP_012548.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:455338-455934:+ | gene-YJR014W_MUCL42920 | rna-NM_001181672.1_MUCL42920 | cds-NP_012548.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:461808-462404:+ | gene-YJR014W_NCIM3186 | rna-NM_001181672.1_NCIM3186 | cds-NP_012548.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:447883-448479:+ | gene-YJR014W_NCYC1407 | rna-NM_001181672.1_NCYC1407 | cds-NP_012548.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:466199-466795:+ | gene-YJR014W_PE2H3 | rna-NM_001181672.1_PE2H3 | cds-NP_012548.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:459893-460489:+ | gene-YJR014W_PE2H4 | rna-NM_001181672.1_PE2H4 | cds-NP_012548.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:461829-462425:+ | gene-YJR014W_S288C | rna-NM_001181672.1_S288C | cds-NP_012548.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:257825-258421:+ | gene-YJR014W_SA1 | rna-NM_001181672.1_SA1 | cds-NP_012548.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:454832-455428:+ | gene-YJR014W_ThermosaccDry | rna-NM_001181672.1_ThermosaccDry | cds-NP_012548.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:457118-457714:+ | gene-YJR014W_VR1 | rna-NM_001181672.1_VR1 | cds-NP_012548.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:434760-435356:+ | gene-YJR014W_ZTW1 | rna-NM_001181672.1_ZTW1 | cds-NP_012548.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:459609-460208:+ | gene-YJR014W_Sparadoxus | rna-NM_001181672.1_Sparadoxus | cds-NP_012548.1_Sparadoxus | 90.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |