Gene name: TMA20
Reference locus (S288C): YER007C-A
Gene biotype: protein_coding
Description: Translation machinery-associated protein 20; Protein of unknown function that associates with ribosomes; has a putative RNA binding domain; interacts with Tma22p; null mutant exhibits translation defects; has homology to human oncogene MCT-1; protein abundance increases in response to DNA replication stress; Belongs to the TMA20 family
Top 10 interactors (score): TMA22 (0.999); TMA64 (0.977); RPB10 (0.904); RPS20 (0.903); PRE8 (0.896); MRP7 (0.896); RPN12 (0.896); RPS13 (0.895); RPS12 (0.89); LSM6 (0.888); TRM112 (0.884); RPS31 (0.875); RPS28B (0.874); ASC1 (0.856); RPS5 (0.849); RPS11B (0.849); RPS2 (0.848); RPS15 (0.842); RPS25B (0.84); RPS30B (0.835)
Homologues (species, bitscore): MCTS1 (Homo sapiens, 163.3); Mcts1 (Mus musculus, 168.3); mcts1 (Danio rerio, 170.6); mcts1 (Xenopus tropicalis, 167.9); CG5941 (Drosophila melanogaster, 165.2); C11D2.7 (Caenorhabditis elegans, 163.7); AT1G09150 (Arabidopsis thaliana, 155.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:159926-160574:- | gene-YER007C-A_AKU4011 | rna-NM_001180857.3_AKU4011 | cds-NP_010923.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:265110-265758:+ | gene-YER007C-A_BG1 | rna-NM_001180857.3_BG1 | cds-NP_010923.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:167613-168261:- | gene-YER007C-A_Bruggeman | rna-NM_001180857.3_Bruggeman | cds-NP_010923.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:162842-163490:- | gene-YER007C-A_CAT1 | rna-NM_001180857.3_CAT1 | cds-NP_010923.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:160235-160883:- | gene-YER007C-A_CBS1585 | rna-NM_001180857.3_CBS1585 | cds-NP_010923.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:161504-162152:- | gene-YER007C-A_CBS436 | rna-NM_001180857.3_CBS436 | cds-NP_010923.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:160129-160777:- | gene-YER007C-A_CBS6412 | rna-NM_001180857.3_CBS6412 | cds-NP_010923.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:164775-165423:- | gene-YER007C-A_CBS6413 | rna-NM_001180857.3_CBS6413 | cds-NP_010923.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:164063-164711:- | gene-YER007C-A_CENPK1137D | rna-NM_001180857.3_CENPK1137D | cds-NP_010923.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:160590-161238:- | gene-YER007C-A_EthanolRed | rna-NM_001180857.3_EthanolRed | cds-NP_010923.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:160850-161498:- | gene-YER007C-A_FaliES1 | rna-NM_001180857.3_FaliES1 | cds-NP_010923.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000024.1:27817-28465:- | gene-YER007C-A_JAY291 | rna-NM_001180857.3_JAY291 | cds-NP_010923.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:164150-164798:- | gene-YER007C-A_MUCL30387 | rna-NM_001180857.3_MUCL30387 | cds-NP_010923.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:160671-161319:- | gene-YER007C-A_MUCL30388 | rna-NM_001180857.3_MUCL30388 | cds-NP_010923.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:159271-159919:- | gene-YER007C-A_MUCL39482 | rna-NM_001180857.3_MUCL39482 | cds-NP_010923.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:165143-165791:- | gene-YER007C-A_MUCL42920 | rna-NM_001180857.3_MUCL42920 | cds-NP_010923.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:166236-166884:- | gene-YER007C-A_NCIM3186 | rna-NM_001180857.3_NCIM3186 | cds-NP_010923.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:164345-164993:- | gene-YER007C-A_NCYC1407 | rna-NM_001180857.3_NCYC1407 | cds-NP_010923.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:168644-169292:- | gene-YER007C-A_PE2H3 | rna-NM_001180857.3_PE2H3 | cds-NP_010923.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:164559-165207:- | gene-YER007C-A_PE2H4 | rna-NM_001180857.3_PE2H4 | cds-NP_010923.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:166237-166885:- | gene-YER007C-A_S288C | rna-NM_001180857.3_S288C | cds-NP_010923.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:76724-77372:+ | gene-YER007C-A_SA1 | rna-NM_001180857.3_SA1 | cds-NP_010923.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:161256-161904:- | gene-YER007C-A_ThermosaccDry | rna-NM_001180857.3_ThermosaccDry | cds-NP_010923.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:160735-161383:- | gene-YER007C-A_VR1 | rna-NM_001180857.3_VR1 | cds-NP_010923.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:159286-159934:- | gene-YER007C-A_ZTW1 | rna-NM_001180857.3_ZTW1 | cds-NP_010923.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:163996-164644:- | gene-YER007C-A_Sparadoxus | rna-NM_001180857.3_Sparadoxus | cds-NP_010923.3_Sparadoxus | 92.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |