Gene name: TMA19
Reference locus (S288C): YKL056C
Gene biotype: protein_coding
Description: Protein that associates with ribosomes; homolog of translationally controlled tumor protein; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and relocates to the mitochondrial outer surface upon oxidative stress; Belongs to the TCTP family
Top 10 interactors (score): RPL9B (0.999); RPP2B (0.999); RPL40B (0.999); RPS3 (0.999); RPL15A (0.999); RPS5 (0.999); RPL38 (0.999); RPP1A (0.999); RPL30 (0.999); RPL28 (0.999); EFT1 (0.999); EFB1 (0.999); RPP0 (0.999); RPL33A (0.999); RPS8B (0.999); RPP2A (0.999); RPS25B (0.999); RPS13 (0.999); RPS4A (0.999); RPS16B (0.999)
Homologues (species, bitscore): TPT1 (Homo sapiens, 139.8); Tpt1 (Mus musculus, 136.7); tpt1 (Danio rerio, 119.0); tpt1 (Xenopus tropicalis, 142.1); Tctp (Drosophila melanogaster, 136.0); tct-1 (Caenorhabditis elegans, 88.2); TCTP (Arabidopsis thaliana, 116.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:320387-320890:- | gene-YKL056C_AKU4011 | rna-NM_001179622.1_AKU4011 | cds-NP_012867.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:323062-323565:+ | gene-YKL056C_BG1 | rna-NM_001179622.1_BG1 | cds-NP_012867.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:339425-339928:- | gene-YKL056C_Bruggeman | rna-NM_001179622.1_Bruggeman | cds-NP_012867.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:335863-336366:- | gene-YKL056C_CAT1 | rna-NM_001179622.1_CAT1 | cds-NP_012867.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:333117-333620:- | gene-YKL056C_CBS1585 | rna-NM_001179622.1_CBS1585 | cds-NP_012867.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:331271-331774:- | gene-YKL056C_CBS436 | rna-NM_001179622.1_CBS436 | cds-NP_012867.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:317258-317761:- | gene-YKL056C_CBS6412 | rna-NM_001179622.1_CBS6412 | cds-NP_012867.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:333083-333586:- | gene-YKL056C_CBS6413 | rna-NM_001179622.1_CBS6413 | cds-NP_012867.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:334073-334576:- | gene-YKL056C_CENPK1137D | rna-NM_001179622.1_CENPK1137D | cds-NP_012867.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:331089-331592:- | gene-YKL056C_EthanolRed | rna-NM_001179622.1_EthanolRed | cds-NP_012867.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:331902-332405:- | gene-YKL056C_FaliES1 | rna-NM_001179622.1_FaliES1 | cds-NP_012867.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000080.1:36833-37336:- | gene-YKL056C_JAY291 | rna-NM_001179622.1_JAY291 | cds-NP_012867.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:340336-340839:- | gene-YKL056C_MUCL30387 | rna-NM_001179622.1_MUCL30387 | cds-NP_012867.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:335235-335738:- | gene-YKL056C_MUCL30388 | rna-NM_001179622.1_MUCL30388 | cds-NP_012867.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:332413-332916:- | gene-YKL056C_MUCL39482 | rna-NM_001179622.1_MUCL39482 | cds-NP_012867.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:337323-337826:- | gene-YKL056C_MUCL42920 | rna-NM_001179622.1_MUCL42920 | cds-NP_012867.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:334401-334904:- | gene-YKL056C_NCIM3186 | rna-NM_001179622.1_NCIM3186 | cds-NP_012867.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:332610-333113:- | gene-YKL056C_NCYC1407 | rna-NM_001179622.1_NCYC1407 | cds-NP_012867.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:357174-357677:- | gene-YKL056C_PE2H3 | rna-NM_001179622.1_PE2H3 | cds-NP_012867.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:341914-342417:- | gene-YKL056C_PE2H4 | rna-NM_001179622.1_PE2H4 | cds-NP_012867.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:334412-334915:- | gene-YKL056C_S288C | rna-NM_001179622.1_S288C | cds-NP_012867.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000027.1:12410-12913:- | gene-YKL056C_SA1 | rna-NM_001179622.1_SA1 | cds-NP_012867.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:333092-333595:- | gene-YKL056C_ThermosaccDry | rna-NM_001179622.1_ThermosaccDry | cds-NP_012867.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:332239-332742:- | gene-YKL056C_VR1 | rna-NM_001179622.1_VR1 | cds-NP_012867.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:331138-331641:- | gene-YKL056C_ZTW1 | rna-NM_001179622.1_ZTW1 | cds-NP_012867.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:350327-350830:- | gene-YKL056C_Sparadoxus | rna-NM_001179622.1_Sparadoxus | cds-NP_012867.1_Sparadoxus | 97.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |