Gene name: TMA17
Reference locus (S288C): YDL110C
Gene biotype: protein_coding
Description: Translation machinery-associated protein 17; ATPase dedicated chaperone that adapts proteasome assembly to stress; Tma17p is induced upon stress; interacts with Rpt6p to assist its pairing to Rpt3p and early steps in proteasome biogenesis; associates with ribosomes; heterozygous deletion demonstrated increases in chromosome instability in a rad9 deletion background; protein abundance is decreased upon intracellular iron depletion
Top 10 interactors (score): NAS6 (0.912); MSC1 (0.901); OM45 (0.898); TFS1 (0.883); DCS2 (0.879); SOL4 (0.859); RPT6 (0.859); HSM3 (0.848); PNC1 (0.844); STF2 (0.844); RTC3 (0.831); OM14 (0.804); FAS1 (0.8); FAS2 (0.8); RPT3 (0.791); YLR345W (0.785); RPT4 (0.774); RPN14 (0.767); RTN2 (0.767); NAS2 (0.764)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:249137-249589:- | gene-YDL110C_AKU4011 | rna-NM_001180169.1_AKU4011 | cds-NP_010173.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:300362-300814:+ | gene-YDL110C_BG1 | rna-NM_001180169.1_BG1 | cds-NP_010173.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:266548-267000:- | gene-YDL110C_Bruggeman | rna-NM_001180169.1_Bruggeman | cds-NP_010173.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:263288-263740:- | gene-YDL110C_CAT1 | rna-NM_001180169.1_CAT1 | cds-NP_010173.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:247397-247849:- | gene-YDL110C_CBS1585 | rna-NM_001180169.1_CBS1585 | cds-NP_010173.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:264057-264509:- | gene-YDL110C_CBS436 | rna-NM_001180169.1_CBS436 | cds-NP_010173.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:245823-246275:- | gene-YDL110C_CBS6412 | rna-NM_001180169.1_CBS6412 | cds-NP_010173.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:265558-266010:- | gene-YDL110C_CBS6413 | rna-NM_001180169.1_CBS6413 | cds-NP_010173.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:263284-263736:- | gene-YDL110C_CENPK1137D | rna-NM_001180169.1_CENPK1137D | cds-NP_010173.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:260164-260616:- | gene-YDL110C_EthanolRed | rna-NM_001180169.1_EthanolRed | cds-NP_010173.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:266134-266586:- | gene-YDL110C_FaliES1 | rna-NM_001180169.1_FaliES1 | cds-NP_010173.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:36177-36629:- | gene-YDL110C_JAY291 | rna-NM_001180169.1_JAY291 | cds-NP_010173.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:264335-264787:- | gene-YDL110C_MUCL30387 | rna-NM_001180169.1_MUCL30387 | cds-NP_010173.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:255093-255545:- | gene-YDL110C_MUCL30388 | rna-NM_001180169.1_MUCL30388 | cds-NP_010173.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:248503-248955:- | gene-YDL110C_MUCL39482 | rna-NM_001180169.1_MUCL39482 | cds-NP_010173.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:170287-170739:- | gene-YDL110C_MUCL42920 | rna-NM_001180169.1_MUCL42920 | cds-NP_010173.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:264435-264887:- | gene-YDL110C_NCIM3186 | rna-NM_001180169.1_NCIM3186 | cds-NP_010173.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:248531-248983:- | gene-YDL110C_NCYC1407 | rna-NM_001180169.1_NCYC1407 | cds-NP_010173.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:255288-255740:- | gene-YDL110C_PE2H3 | rna-NM_001180169.1_PE2H3 | cds-NP_010173.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:255292-255744:- | gene-YDL110C_PE2H4 | rna-NM_001180169.1_PE2H4 | cds-NP_010173.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:264512-264964:- | gene-YDL110C_S288C | rna-NM_001180169.1_S288C | cds-NP_010173.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:169946-170398:+ | gene-YDL110C_SA1 | rna-NM_001180169.1_SA1 | cds-NP_010173.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:265645-266097:- | gene-YDL110C_ThermosaccDry | rna-NM_001180169.1_ThermosaccDry | cds-NP_010173.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:267750-268202:- | gene-YDL110C_VR1 | rna-NM_001180169.1_VR1 | cds-NP_010173.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:263572-264024:- | gene-YDL110C_ZTW1 | rna-NM_001180169.1_ZTW1 | cds-NP_010173.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:265730-266182:- | gene-YDL110C_Sparadoxus | rna-NM_001180169.1_Sparadoxus | cds-NP_010173.1_Sparadoxus | 93.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |