Gene name: TMA16
Reference locus (S288C): YOR252W
Gene biotype: protein_coding
Description: Translation machinery-associated protein 16; Protein of unknown function that associates with ribosomes; Belongs to the UPF0534 family
Top 10 interactors (score): RRT14 (0.978); FCF2 (0.943); RRS1 (0.915); YBL028C (0.908); NOP15 (0.906); RRP36 (0.903); YDR514C (0.901); EBP2 (0.898); YCR016W (0.891); YLR287C (0.797); BMT2 (0.789); BMT5 (0.774); SYO1 (0.769); RPF2 (0.767); HGH1 (0.76); SFM1 (0.755); UTP23 (0.749); IMP4 (0.749); EFM2 (0.748); NIP7 (0.748)
Homologues (species, bitscore): tma16 (Danio rerio, 57.0); tma16 (Xenopus tropicalis, 50.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:794438-794974:+ | gene-YOR252W_AKU4011 | rna-NM_001183671.1_AKU4011 | cds-NP_014895.2_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:196481-197017:+ | gene-YOR252W_BG1 | rna-NM_001183671.1_BG1 | cds-NP_014895.2_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:779906-780442:+ | gene-YOR252W_Bruggeman | rna-NM_001183671.1_Bruggeman | cds-NP_014895.2_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:780559-781095:+ | gene-YOR252W_CAT1 | rna-NM_001183671.1_CAT1 | cds-NP_014895.2_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:777427-777963:+ | gene-YOR252W_CBS1585 | rna-NM_001183671.1_CBS1585 | cds-NP_014895.2_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:776124-776660:+ | gene-YOR252W_CBS436 | rna-NM_001183671.1_CBS436 | cds-NP_014895.2_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:774546-775082:+ | gene-YOR252W_CBS6412 | rna-NM_001183671.1_CBS6412 | cds-NP_014895.2_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:783186-783722:+ | gene-YOR252W_CBS6413 | rna-NM_001183671.1_CBS6413 | cds-NP_014895.2_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:803431-803967:+ | gene-YOR252W_CENPK1137D | rna-NM_001183671.1_CENPK1137D | cds-NP_014895.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:770555-771091:+ | gene-YOR252W_EthanolRed | rna-NM_001183671.1_EthanolRed | cds-NP_014895.2_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:775954-776490:+ | gene-YOR252W_FaliES1 | rna-NM_001183671.1_FaliES1 | cds-NP_014895.2_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000381.1:50337-50873:- | gene-YOR252W_JAY291 | rna-NM_001183671.1_JAY291 | cds-NP_014895.2_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:784179-784715:+ | gene-YOR252W_MUCL30387 | rna-NM_001183671.1_MUCL30387 | cds-NP_014895.2_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:791295-791831:+ | gene-YOR252W_MUCL30388 | rna-NM_001183671.1_MUCL30388 | cds-NP_014895.2_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:784757-785293:+ | gene-YOR252W_MUCL39482 | rna-NM_001183671.1_MUCL39482 | cds-NP_014895.2_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:794347-794883:+ | gene-YOR252W_MUCL42920 | rna-NM_001183671.1_MUCL42920 | cds-NP_014895.2_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:803556-804092:+ | gene-YOR252W_NCIM3186 | rna-NM_001183671.1_NCIM3186 | cds-NP_014895.2_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:784856-785392:+ | gene-YOR252W_NCYC1407 | rna-NM_001183671.1_NCYC1407 | cds-NP_014895.2_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:784162-784698:+ | gene-YOR252W_PE2H3 | rna-NM_001183671.1_PE2H3 | cds-NP_014895.2_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:794539-795075:+ | gene-YOR252W_PE2H4 | rna-NM_001183671.1_PE2H4 | cds-NP_014895.2_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:803667-804203:+ | gene-YOR252W_S288C | rna-NM_001183671.1_S288C | cds-NP_014895.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:213663-214199:+ | gene-YOR252W_SA1 | rna-NM_001183671.1_SA1 | cds-NP_014895.2_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:775137-775673:+ | gene-YOR252W_ThermosaccDry | rna-NM_001183671.1_ThermosaccDry | cds-NP_014895.2_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:838602-839138:+ | gene-YOR252W_VR1 | rna-NM_001183671.1_VR1 | cds-NP_014895.2_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:508053-508589:+ | gene-YOR252W_ZTW1 | rna-NM_001183671.1_ZTW1 | cds-NP_014895.2_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:780913-781449:+ | gene-YOR252W_Sparadoxus | rna-NM_001183671.1_Sparadoxus | cds-NP_014895.2_Sparadoxus | 92.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |