Gene name: TMA108
Reference locus (S288C): YIL137C
Gene biotype: protein_coding
Description: Protein TMA108; Ribosome-associated, nascent chain binding factor; binds N-terminal region of nascent peptides during translation; recognizes target proteins via its putative metallopeptidase peptide-binding pocket
Top 10 interactors (score): SEC4 (0.979); EGD1 (0.952); EGD2 (0.949); BTT1 (0.902); SEC26 (0.761); VPS73 (0.748); YBR241C (0.748); SSF1 (0.747); TMA46 (0.706); RPS22A (0.691); PRD1 (0.679); REX3 (0.674); EMC10 (0.673); RAD28 (0.672); BMH1 (0.656); RBG1 (0.652); CLU1 (0.648); MAP1 (0.643); VPH1 (0.635); GCN20 (0.635)
Homologues (species, bitscore): NPEPPS (Homo sapiens, 182.2); Npepps (Mus musculus, 182.6); enpep (Danio rerio, 195.3); npepps (Xenopus tropicalis, 185.3); Psa (Drosophila melanogaster, 177.9); pam-1 (Caenorhabditis elegans, 178.7); APM1 (Arabidopsis thaliana, 173.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:91169-94009:- | gene-YIL137C_AKU4011 | rna-NM_001179485.1_AKU4011 | cds-NP_012129.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000174.1:43356-46196:+ | gene-YIL137C_BG1 | rna-NM_001179485.1_BG1 | cds-NP_012129.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:93924-96764:- | gene-YIL137C_Bruggeman | rna-NM_001179485.1_Bruggeman | cds-NP_012129.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:87736-90576:- | gene-YIL137C_CAT1 | rna-NM_001179485.1_CAT1 | cds-NP_012129.1_CAT1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:91371-94211:- | gene-YIL137C_CBS1585 | rna-NM_001179485.1_CBS1585 | cds-NP_012129.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:82509-85349:- | gene-YIL137C_CBS436 | rna-NM_001179485.1_CBS436 | cds-NP_012129.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:88902-91742:- | gene-YIL137C_CBS6412 | rna-NM_001179485.1_CBS6412 | cds-NP_012129.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:83057-85897:- | gene-YIL137C_CBS6413 | rna-NM_001179485.1_CBS6413 | cds-NP_012129.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:81651-84491:- | gene-YIL137C_CENPK1137D | rna-NM_001179485.1_CENPK1137D | cds-NP_012129.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:76705-79545:- | gene-YIL137C_EthanolRed | rna-NM_001179485.1_EthanolRed | cds-NP_012129.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:92508-95348:- | gene-YIL137C_FaliES1 | rna-NM_001179485.1_FaliES1 | cds-NP_012129.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000319.1:13009-15849:+ | gene-YIL137C_JAY291 | rna-NM_001179485.1_JAY291 | cds-NP_012129.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:91686-94526:- | gene-YIL137C_MUCL30387 | rna-NM_001179485.1_MUCL30387 | cds-NP_012129.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:91364-94204:- | gene-YIL137C_MUCL30388 | rna-NM_001179485.1_MUCL30388 | cds-NP_012129.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:92298-95138:- | gene-YIL137C_MUCL39482 | rna-NM_001179485.1_MUCL39482 | cds-NP_012129.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:95498-98338:- | gene-YIL137C_MUCL42920 | rna-NM_001179485.1_MUCL42920 | cds-NP_012129.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:89948-92788:- | gene-YIL137C_NCIM3186 | rna-NM_001179485.1_NCIM3186 | cds-NP_012129.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:96263-99103:- | gene-YIL137C_NCYC1407 | rna-NM_001179485.1_NCYC1407 | cds-NP_012129.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:90883-93723:- | gene-YIL137C_PE2H3 | rna-NM_001179485.1_PE2H3 | cds-NP_012129.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:84845-87685:- | gene-YIL137C_PE2H4 | rna-NM_001179485.1_PE2H4 | cds-NP_012129.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:89948-92788:- | gene-YIL137C_S288C | rna-NM_001179485.1_S288C | cds-NP_012129.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000050.1:68524-71364:- | gene-YIL137C_SA1 | rna-NM_001179485.1_SA1 | cds-NP_012129.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:91118-93958:- | gene-YIL137C_ThermosaccDry | rna-NM_001179485.1_ThermosaccDry | cds-NP_012129.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:88273-91113:- | gene-YIL137C_VR1 | rna-NM_001179485.1_VR1 | cds-NP_012129.1_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:66099-68939:- | gene-YIL137C_ZTW1 | rna-NM_001179485.1_ZTW1 | cds-NP_012129.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:83922-86762:- | gene-YIL137C_Sparadoxus | rna-NM_001179485.1_Sparadoxus | cds-NP_012129.1_Sparadoxus | 88.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |