Gene name: TMA10
Reference locus (S288C): YLR327C
Gene biotype: protein_coding
Description: Translation machinery-associated protein 10; Protein of unknown function that associates with ribosomes; protein abundance increases in response to DNA replication stress; TMA10 has a paralog, STF2, that arose from the whole genome duplication
Top 10 interactors (score): RGI1 (0.98); IGD1 (0.965); MPC3 (0.954); HXK1 (0.935); STF2 (0.922); GLC3 (0.916); HSP42 (0.889); PGM2 (0.872); YHR138C (0.868); ALD4 (0.864); TFS1 (0.862); OM45 (0.861); DCS2 (0.861); ISF1 (0.859); PNC1 (0.844); USV1 (0.843); YLR345W (0.831); AIM17 (0.826); HSP26 (0.818); RTC3 (0.81)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:731582-731842:- | gene-YLR327C_AKU4011 | rna-NM_001182216.1_AKU4011 | cds-NP_013431.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:841-1101:+ | gene-YLR327C_BG1 | rna-NM_001182216.1_BG1 | cds-NP_013431.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:767415-767675:- | gene-YLR327C_Bruggeman | rna-NM_001182216.1_Bruggeman | cds-NP_013431.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:765569-765829:- | gene-YLR327C_CAT1 | rna-NM_001182216.1_CAT1 | cds-NP_013431.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:766498-766758:- | gene-YLR327C_CBS1585 | rna-NM_001182216.1_CBS1585 | cds-NP_013431.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:751098-751358:- | gene-YLR327C_CBS436 | rna-NM_001182216.1_CBS436 | cds-NP_013431.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:804453-804713:- | gene-YLR327C_CBS6412 | rna-NM_001182216.1_CBS6412 | cds-NP_013431.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:767170-767430:- | gene-YLR327C_CBS6413 | rna-NM_001182216.1_CBS6413 | cds-NP_013431.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:767741-768001:- | gene-YLR327C_CENPK1137D | rna-NM_001182216.1_CENPK1137D | cds-NP_013431.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:724867-725127:- | gene-YLR327C_EthanolRed | rna-NM_001182216.1_EthanolRed | cds-NP_013431.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:754068-754328:- | gene-YLR327C_FaliES1 | rna-NM_001182216.1_FaliES1 | cds-NP_013431.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000296.1:13533-13793:+ | gene-YLR327C_JAY291 | rna-NM_001182216.1_JAY291 | cds-NP_013431.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:766643-766903:- | gene-YLR327C_MUCL30387 | rna-NM_001182216.1_MUCL30387 | cds-NP_013431.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:772226-772486:- | gene-YLR327C_MUCL30388 | rna-NM_001182216.1_MUCL30388 | cds-NP_013431.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:767739-767999:- | gene-YLR327C_MUCL39482 | rna-NM_001182216.1_MUCL39482 | cds-NP_013431.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:762892-763152:- | gene-YLR327C_MUCL42920 | rna-NM_001182216.1_MUCL42920 | cds-NP_013431.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:783101-783361:- | gene-YLR327C_NCIM3186 | rna-NM_001182216.1_NCIM3186 | cds-NP_013431.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:777079-777339:- | gene-YLR327C_NCYC1407 | rna-NM_001182216.1_NCYC1407 | cds-NP_013431.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:764861-765121:- | gene-YLR327C_PE2H3 | rna-NM_001182216.1_PE2H3 | cds-NP_013431.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:764605-764865:- | gene-YLR327C_PE2H4 | rna-NM_001182216.1_PE2H4 | cds-NP_013431.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:783127-783387:- | gene-YLR327C_S288C | rna-NM_001182216.1_S288C | cds-NP_013431.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000039.1:922-1182:+ | gene-YLR327C_SA1 | rna-NM_001182216.1_SA1 | cds-NP_013431.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:755960-756220:- | gene-YLR327C_ThermosaccDry | rna-NM_001182216.1_ThermosaccDry | cds-NP_013431.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:768077-768337:- | gene-YLR327C_VR1 | rna-NM_001182216.1_VR1 | cds-NP_013431.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:94372-94632:- | gene-YLR327C_ZTW1 | rna-NM_001182216.1_ZTW1 | cds-NP_013431.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:742129-742389:- | gene-YLR327C_Sparadoxus | rna-NM_001182216.1_Sparadoxus | cds-NP_013431.1_Sparadoxus | 91.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |