Gene name: TLG1
Reference locus (S288C): YDR468C
Gene biotype: protein_coding
Description: Essential t-SNARE that mediates fusion of vesicles with the late Golgi; forms a complex with Tlg2p and Vti1p; mediates fusion of endosome-derived vesicles with the late Golgi; binds the docking complex VFT (Vps fifty-three) through interaction with Vps51p; Belongs to the syntaxin family
Top 10 interactors (score): SNC2 (0.999); SNC1 (0.999); TLG2 (0.999); VTI1 (0.999); PEP12 (0.998); SED5 (0.998); VPS45 (0.997); GOS1 (0.994); VPS51 (0.994); YKT6 (0.993); YPT6 (0.988); SEC22 (0.982); BOS1 (0.981); VAM3 (0.981); SSO1 (0.979); SEC17 (0.979); BET1 (0.973); VPS54 (0.97); SEC9 (0.96); NYV1 (0.96)
Homologues (species, bitscore): stx6 (Danio rerio, 54.3); SYP61 (Arabidopsis thaliana, 58.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1337947-1338621:- | gene-YDR468C_AKU4011 | rna-NM_001180776.3_AKU4011 | cds-NP_010756.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:213053-213727:- | gene-YDR468C_BG1 | rna-NM_001180776.3_BG1 | cds-NP_010756.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1369359-1370033:- | gene-YDR468C_Bruggeman | rna-NM_001180776.3_Bruggeman | cds-NP_010756.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1346503-1347177:- | gene-YDR468C_CAT1 | rna-NM_001180776.3_CAT1 | cds-NP_010756.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1332243-1332917:- | gene-YDR468C_CBS1585 | rna-NM_001180776.3_CBS1585 | cds-NP_010756.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1351611-1352285:- | gene-YDR468C_CBS436 | rna-NM_001180776.3_CBS436 | cds-NP_010756.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1327870-1328544:- | gene-YDR468C_CBS6412 | rna-NM_001180776.3_CBS6412 | cds-NP_010756.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1350881-1351555:- | gene-YDR468C_CBS6413 | rna-NM_001180776.3_CBS6413 | cds-NP_010756.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1396722-1397396:- | gene-YDR468C_CENPK1137D | rna-NM_001180776.3_CENPK1137D | cds-NP_010756.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1341285-1341959:- | gene-YDR468C_EthanolRed | rna-NM_001180776.3_EthanolRed | cds-NP_010756.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1344838-1345512:- | gene-YDR468C_FaliES1 | rna-NM_001180776.3_FaliES1 | cds-NP_010756.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:43095-43769:- | gene-YDR468C_JAY291 | rna-NM_001180776.3_JAY291 | cds-NP_010756.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1351851-1352525:- | gene-YDR468C_MUCL30387 | rna-NM_001180776.3_MUCL30387 | cds-NP_010756.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1333873-1334547:- | gene-YDR468C_MUCL30388 | rna-NM_001180776.3_MUCL30388 | cds-NP_010756.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1323727-1324401:- | gene-YDR468C_MUCL39482 | rna-NM_001180776.3_MUCL39482 | cds-NP_010756.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1266527-1267201:- | gene-YDR468C_MUCL42920 | rna-NM_001180776.3_MUCL42920 | cds-NP_010756.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1397949-1398623:- | gene-YDR468C_NCIM3186 | rna-NM_001180776.3_NCIM3186 | cds-NP_010756.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1337500-1338174:- | gene-YDR468C_NCYC1407 | rna-NM_001180776.3_NCYC1407 | cds-NP_010756.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1348346-1349020:- | gene-YDR468C_PE2H3 | rna-NM_001180776.3_PE2H3 | cds-NP_010756.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1353919-1354593:- | gene-YDR468C_PE2H4 | rna-NM_001180776.3_PE2H4 | cds-NP_010756.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1398026-1398700:- | gene-YDR468C_S288C | rna-NM_001180776.3_S288C | cds-NP_010756.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:218460-219134:+ | gene-YDR468C_SA1 | rna-NM_001180776.3_SA1 | cds-NP_010756.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1349060-1349734:- | gene-YDR468C_ThermosaccDry | rna-NM_001180776.3_ThermosaccDry | cds-NP_010756.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1364789-1365463:- | gene-YDR468C_VR1 | rna-NM_001180776.3_VR1 | cds-NP_010756.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:391732-392406:- | gene-YDR468C_ZTW1 | rna-NM_001180776.3_ZTW1 | cds-NP_010756.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1352111-1352785:- | gene-YDR468C_Sparadoxus | rna-NM_001180776.3_Sparadoxus | cds-NP_010756.3_Sparadoxus | 90.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |