Gene name: TIR4
Reference locus (S288C): YOR009W
Gene biotype: protein_coding
Description: Cell wall mannoprotein; expressed under anaerobic conditions and required for anaerobic growth; transcription is also induced by cold shock; member of the Srp1p/Tip1p family of serine-alanine-rich proteins
Top 10 interactors (score): AUS1 (0.948); DAN1 (0.943); TIR3 (0.934); PAU24 (0.924); PAU5 (0.914); PAU23 (0.898); PAU7 (0.867); PAU19 (0.838); PAU6 (0.802); PAU14 (0.79); PAU16 (0.747); PAU18 (0.742); PAU1 (0.72); PAU17 (0.704); HES1 (0.672); PAU15 (0.663); PAU2 (0.661); PAU3 (0.652); TIR1 (0.635); PAU21 (0.635)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:328699-330051:+ | gene-YOR009W_AKU4011 | rna-NM_001183428.1_AKU4011 | cds-NP_014652.1_AKU4011 | 90.2 | 92.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:144311-145594:+ | gene-YOR009W_BG1 | rna-NM_001183428.1_BG1 | cds-NP_014652.1_BG1 | 87.7 | 87.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:331470-332786:+ | gene-YOR009W_Bruggeman | rna-NM_001183428.1_Bruggeman | cds-NP_014652.1_Bruggeman | 87.5 | 89.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:329618-330934:+ | gene-YOR009W_CAT1 | rna-NM_001183428.1_CAT1 | cds-NP_014652.1_CAT1 | 88.0 | 89.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:323373-324741:+ | gene-YOR009W_CBS1585 | rna-NM_001183428.1_CBS1585 | cds-NP_014652.1_CBS1585 | 91.5 | 93.5 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:327641-329068:+ | gene-YOR009W_CBS436 | rna-NM_001183428.1_CBS436 | cds-NP_014652.1_CBS436 | 97.2 | 97.5 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:322679-324094:+ | gene-YOR009W_CBS6412 | rna-NM_001183428.1_CBS6412 | cds-NP_014652.1_CBS6412 | 93.6 | 96.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:330210-331467:+ | gene-YOR009W_CBS6413 | rna-NM_001183428.1_CBS6413 | cds-NP_014652.1_CBS6413 | 84.8 | 85.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:344273-345553:+ | gene-YOR009W_CENPK1137D | rna-NM_001183428.1_CENPK1137D | cds-NP_014652.1_CENPK1137D | 85.9 | 87.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:325460-326750:+ | gene-YOR009W_EthanolRed | rna-NM_001183428.1_EthanolRed | cds-NP_014652.1_EthanolRed | 86.1 | 88.1 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:328787-330067:+ | gene-YOR009W_FaliES1 | rna-NM_001183428.1_FaliES1 | cds-NP_014652.1_FaliES1 | 85.3 | 87.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000035.1:1-713:+ | gene-YOR009W_JAY291 | rna-NM_001183428.1_JAY291 | cds-NP_014652.1_JAY291 | 48.7 | 48.7 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | MBVX01000318.1:152-1059:+ | gene-YOR009W_MUCL30387 | rna-NM_001183428.1_MUCL30387 | cds-NP_014652.1_MUCL30387 | 61.9 | 62.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | MBVW01000301.1:152-1023:+ | gene-YOR009W_MUCL30388 | rna-NM_001183428.1_MUCL30388 | cds-NP_014652.1_MUCL30388 | 59.4 | 59.5 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:330856-332224:+ | gene-YOR009W_MUCL39482 | rna-NM_001183428.1_MUCL39482 | cds-NP_014652.1_MUCL39482 | 91.2 | 93.5 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:345710-347026:+ | gene-YOR009W_MUCL42920 | rna-NM_001183428.1_MUCL42920 | cds-NP_014652.1_MUCL42920 | 87.4 | 89.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:344224-345687:+ | gene-YOR009W_NCIM3186 | rna-NM_001183428.1_NCIM3186 | cds-NP_014652.1_NCIM3186 | 96.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:337541-338924:+ | gene-YOR009W_NCYC1407 | rna-NM_001183428.1_NCYC1407 | cds-NP_014652.1_NCYC1407 | 92.2 | 94.5 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:336360-337730:+ | gene-YOR009W_PE2H3 | rna-NM_001183428.1_PE2H3 | cds-NP_014652.1_PE2H3 | 82.5 | 90.5 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:346739-348109:+ | gene-YOR009W_PE2H4 | rna-NM_001183428.1_PE2H4 | cds-NP_014652.1_PE2H4 | 82.5 | 90.5 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:344335-345798:+ | gene-YOR009W_S288C | rna-NM_001183428.1_S288C | cds-NP_014652.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:312302-313618:+ | gene-YOR009W_SA1 | rna-NM_001183428.1_SA1 | cds-NP_014652.1_SA1 | 88.0 | 89.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:327358-328638:+ | gene-YOR009W_ThermosaccDry | rna-NM_001183428.1_ThermosaccDry | cds-NP_014652.1_ThermosaccDry | 85.5 | 87.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:328190-329506:+ | gene-YOR009W_VR1 | rna-NM_001183428.1_VR1 | cds-NP_014652.1_VR1 | 88.7 | 89.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:62018-63298:+ | gene-YOR009W_ZTW1 | rna-NM_001183428.1_ZTW1 | cds-NP_014652.1_ZTW1 | 85.6 | 87.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:335824-337128:+ | gene-YOR009W_Sparadoxus | rna-NM_001183428.1_Sparadoxus | cds-NP_014652.1_Sparadoxus | 72.2 | 84.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |