Gene name: TIR3
Reference locus (S288C): YIL011W
Gene biotype: protein_coding
Description: Cell wall mannoprotein; member of Srp1p/Tip1p family of serine-alanine-rich proteins; expressed under anaerobic conditions and required for anaerobic growth; TIR3 has a paralog, TIR2, that arose from the whole genome duplication
Top 10 interactors (score): TIR4 (0.934); DAN1 (0.924); AUS1 (0.785); TIR1 (0.669); CWP1 (0.635); CWP2 (0.612); AAC3 (0.599); EMW1 (0.575); UPC2 (0.569); ROX1 (0.568); YJR124C (0.562); ATF2 (0.545); YNL144C (0.526); AIM41 (0.523); YJR015W (0.52); YML083C (0.514); ANB1 (0.513); YLR046C (0.489); ICY1 (0.482); GAD1 (0.482)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:332525-333382:+ | gene-YIL011W_AKU4011 | rna-NM_001179361.1_AKU4011 | cds-NP_012254.1_AKU4011 | 94.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000072.1:92666-93484:- | gene-YIL011W_BG1 | rna-NM_001179361.1_BG1 | cds-NP_012254.1_BG1 | 97.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | MBVY01000336.1:33-750:- | gene-YIL011W_Bruggeman | rna-NM_001179361.1_Bruggeman | cds-NP_012254.1_Bruggeman | 86.7 | 88.2 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:324231-325049:+ | gene-YIL011W_CAT1 | rna-NM_001179361.1_CAT1 | cds-NP_012254.1_CAT1 | 97.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:332616-333455:+ | gene-YIL011W_CBS1585 | rna-NM_001179361.1_CBS1585 | cds-NP_012254.1_CBS1585 | 96.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:325910-326665:+ | gene-YIL011W_CBS436 | rna-NM_001179361.1_CBS436 | cds-NP_012254.1_CBS436 | 89.9 | 91.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:328148-329005:+ | gene-YIL011W_CBS6412 | rna-NM_001179361.1_CBS6412 | cds-NP_012254.1_CBS6412 | 94.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:324768-325619:+ | gene-YIL011W_CBS6413 | rna-NM_001179361.1_CBS6413 | cds-NP_012254.1_CBS6413 | 94.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:325739-326548:+ | gene-YIL011W_CENPK1137D | rna-NM_001179361.1_CENPK1137D | cds-NP_012254.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:316129-316983:+ | gene-YIL011W_EthanolRed | rna-NM_001179361.1_EthanolRed | cds-NP_012254.1_EthanolRed | 94.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:334343-335230:+ | gene-YIL011W_FaliES1 | rna-NM_001179361.1_FaliES1 | cds-NP_012254.1_FaliES1 | 90.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000009.1:56261-57079:- | gene-YIL011W_JAY291 | rna-NM_001179361.1_JAY291 | cds-NP_012254.1_JAY291 | 97.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:334802-335557:+ | gene-YIL011W_MUCL30387 | rna-NM_001179361.1_MUCL30387 | cds-NP_012254.1_MUCL30387 | 89.9 | 91.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:331052-331807:+ | gene-YIL011W_MUCL30388 | rna-NM_001179361.1_MUCL30388 | cds-NP_012254.1_MUCL30388 | 89.9 | 91.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:333205-334062:+ | gene-YIL011W_MUCL39482 | rna-NM_001179361.1_MUCL39482 | cds-NP_012254.1_MUCL39482 | 94.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:336480-337319:+ | gene-YIL011W_MUCL42920 | rna-NM_001179361.1_MUCL42920 | cds-NP_012254.1_MUCL42920 | 95.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:333727-334536:+ | gene-YIL011W_NCIM3186 | rna-NM_001179361.1_NCIM3186 | cds-NP_012254.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:337478-338317:+ | gene-YIL011W_NCYC1407 | rna-NM_001179361.1_NCYC1407 | cds-NP_012254.1_NCYC1407 | 96.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:327779-328597:+ | gene-YIL011W_PE2H3 | rna-NM_001179361.1_PE2H3 | cds-NP_012254.1_PE2H3 | 97.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:322485-323303:+ | gene-YIL011W_PE2H4 | rna-NM_001179361.1_PE2H4 | cds-NP_012254.1_PE2H4 | 97.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:333727-334536:+ | gene-YIL011W_S288C | rna-NM_001179361.1_S288C | cds-NP_012254.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000066.1:8517-9335:+ | gene-YIL011W_SA1 | rna-NM_001179361.1_SA1 | cds-NP_012254.1_SA1 | 97.6 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:332479-333333:+ | gene-YIL011W_ThermosaccDry | rna-NM_001179361.1_ThermosaccDry | cds-NP_012254.1_ThermosaccDry | 94.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:328369-329187:+ | gene-YIL011W_VR1 | rna-NM_001179361.1_VR1 | cds-NP_012254.1_VR1 | 97.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:306491-307330:+ | gene-YIL011W_ZTW1 | rna-NM_001179361.1_ZTW1 | cds-NP_012254.1_ZTW1 | 96.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:326680-327480:+ | gene-YIL011W_Sparadoxus | rna-NM_001179361.1_Sparadoxus | cds-NP_012254.1_Sparadoxus | 82.8 | 94.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |