Gene name: TIR2
Reference locus (S288C): YOR010C
Gene biotype: protein_coding
Description: Cold shock-induced protein TIR2; Putative cell wall mannoprotein; member of the Srp1p/Tip1p family of serine-alanine-rich proteins; transcription is induced by cold shock and anaerobiosis; TIR2 has a paralog, TIR3, that arose from the whole genome duplication
Top 10 interactors (score): PAU23 (0.789); PAU7 (0.714); CWP2 (0.67); TIR1 (0.622); YAL064W-B (0.616); YHR213W-A (0.572); PRM7 (0.563); CMR3 (0.563); TIR4 (0.561); MNT4 (0.56); PAU17 (0.558); YMR317W (0.522); SML1 (0.499); ISF1 (0.483); LRP1 (0.481); SLP1 (0.452); YSP3 (0.451); NSR1 (0.45); ALK2 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:330448-331170:- | gene-YOR010C_AKU4011 | rna-NM_001183429.1_AKU4011 | cds-NP_014653.1_AKU4011 | 95.5 | 95.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:145991-146746:- | gene-YOR010C_BG1 | rna-NM_001183429.1_BG1 | cds-NP_014653.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:333183-333905:- | gene-YOR010C_Bruggeman | rna-NM_001183429.1_Bruggeman | cds-NP_014653.1_Bruggeman | 95.1 | 95.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:331329-332036:- | gene-YOR010C_CAT1 | rna-NM_001183429.1_CAT1 | cds-NP_014653.1_CAT1 | 91.7 | 93.6 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:325138-325860:- | gene-YOR010C_CBS1585 | rna-NM_001183429.1_CBS1585 | cds-NP_014653.1_CBS1585 | 95.5 | 95.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:329465-330220:- | gene-YOR010C_CBS436 | rna-NM_001183429.1_CBS436 | cds-NP_014653.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:324491-325213:- | gene-YOR010C_CBS6412 | rna-NM_001183429.1_CBS6412 | cds-NP_014653.1_CBS6412 | 95.5 | 95.6 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:331864-332586:- | gene-YOR010C_CBS6413 | rna-NM_001183429.1_CBS6413 | cds-NP_014653.1_CBS6413 | 95.5 | 95.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:345950-346705:- | gene-YOR010C_CENPK1137D | rna-NM_001183429.1_CENPK1137D | cds-NP_014653.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:327147-327869:- | gene-YOR010C_EthanolRed | rna-NM_001183429.1_EthanolRed | cds-NP_014653.1_EthanolRed | 95.5 | 95.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:330464-331218:- | gene-YOR010C_FaliES1 | rna-NM_001183429.1_FaliES1 | cds-NP_014653.1_FaliES1 | 96.8 | 99.8 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000035.1:1110-1865:- | gene-YOR010C_JAY291 | rna-NM_001183429.1_JAY291 | cds-NP_014653.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:337542-338297:- | gene-YOR010C_MUCL30387 | rna-NM_001183429.1_MUCL30387 | cds-NP_014653.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:340977-341732:- | gene-YOR010C_MUCL30388 | rna-NM_001183429.1_MUCL30388 | cds-NP_014653.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:332621-333343:- | gene-YOR010C_MUCL39482 | rna-NM_001183429.1_MUCL39482 | cds-NP_014653.1_MUCL39482 | 95.5 | 95.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:347423-348145:- | gene-YOR010C_MUCL42920 | rna-NM_001183429.1_MUCL42920 | cds-NP_014653.1_MUCL42920 | 95.1 | 95.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:346084-346839:- | gene-YOR010C_NCIM3186 | rna-NM_001183429.1_NCIM3186 | cds-NP_014653.1_NCIM3186 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:339321-340043:- | gene-YOR010C_NCYC1407 | rna-NM_001183429.1_NCYC1407 | cds-NP_014653.1_NCYC1407 | 95.5 | 95.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:338127-338882:- | gene-YOR010C_PE2H3 | rna-NM_001183429.1_PE2H3 | cds-NP_014653.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:348506-349261:- | gene-YOR010C_PE2H4 | rna-NM_001183429.1_PE2H4 | cds-NP_014653.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:346195-346950:- | gene-YOR010C_S288C | rna-NM_001183429.1_S288C | cds-NP_014653.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:314013-314720:- | gene-YOR010C_SA1 | rna-NM_001183429.1_SA1 | cds-NP_014653.1_SA1 | 91.7 | 93.6 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:329035-329757:- | gene-YOR010C_ThermosaccDry | rna-NM_001183429.1_ThermosaccDry | cds-NP_014653.1_ThermosaccDry | 95.5 | 95.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:329903-330658:- | gene-YOR010C_VR1 | rna-NM_001183429.1_VR1 | cds-NP_014653.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:63695-64384:- | gene-YOR010C_ZTW1 | rna-NM_001183429.1_ZTW1 | cds-NP_014653.1_ZTW1 | 91.1 | 91.2 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:337555-338298:- | gene-YOR010C_Sparadoxus | rna-NM_001183429.1_Sparadoxus | cds-NP_014653.1_Sparadoxus | 77.6 | 91.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |