Gene name: TIR1
Reference locus (S288C): YER011W
Gene biotype: protein_coding
Description: Cold shock-induced protein TIR1; Cell wall mannoprotein; expression is downregulated at acidic pH and induced by cold shock and anaerobiosis; abundance is increased in cells cultured without shaking; member of the Srp1p/Tip1p family of serine-alanine-rich proteins; Belongs to the SRP1/TIP1 family
Top 10 interactors (score): DAN1 (0.835); ANB1 (0.805); FAF1 (0.747); KAP95 (0.741); FIG2 (0.716); FLO1 (0.71); SED1 (0.698); TIR3 (0.669); TIR4 (0.635); STM1 (0.631); TIR2 (0.622); AGA1 (0.611); NOP58 (0.603); SAG1 (0.597); RRP6 (0.596); NOP7 (0.595); SRB5 (0.583); THO2 (0.583); PIR1 (0.573); AGA2 (0.565)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:168974-169702:+ | gene-YER011W_AKU4011 | rna-NM_001178902.1_AKU4011 | cds-NP_010927.1_AKU4011 | 92.5 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:256051-256743:- | gene-YER011W_BG1 | rna-NM_001178902.1_BG1 | cds-NP_010927.1_BG1 | 88.3 | 90.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:176623-177315:+ | gene-YER011W_Bruggeman | rna-NM_001178902.1_Bruggeman | cds-NP_010927.1_Bruggeman | 88.3 | 90.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:171857-172549:+ | gene-YER011W_CAT1 | rna-NM_001178902.1_CAT1 | cds-NP_010927.1_CAT1 | 88.3 | 90.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:169248-169971:+ | gene-YER011W_CBS1585 | rna-NM_001178902.1_CBS1585 | cds-NP_010927.1_CBS1585 | 91.8 | 94.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:170513-171241:+ | gene-YER011W_CBS436 | rna-NM_001178902.1_CBS436 | cds-NP_010927.1_CBS436 | 95.2 | 95.2 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:169177-169869:+ | gene-YER011W_CBS6412 | rna-NM_001178902.1_CBS6412 | cds-NP_010927.1_CBS6412 | 87.9 | 90.5 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:173788-174516:+ | gene-YER011W_CBS6413 | rna-NM_001178902.1_CBS6413 | cds-NP_010927.1_CBS6413 | 92.4 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:173074-173874:+ | gene-YER011W_CENPK1137D | rna-NM_001178902.1_CENPK1137D | cds-NP_010927.1_CENPK1137D | 82.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:169600-170328:+ | gene-YER011W_EthanolRed | rna-NM_001178902.1_EthanolRed | cds-NP_010927.1_EthanolRed | 92.4 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:169860-170588:+ | gene-YER011W_FaliES1 | rna-NM_001178902.1_FaliES1 | cds-NP_010927.1_FaliES1 | 92.5 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000024.1:36832-37560:+ | gene-YER011W_JAY291 | rna-NM_001178902.1_JAY291 | cds-NP_010927.1_JAY291 | 92.9 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | MBVX01000383.1:1-675:+ | gene-YER011W_MUCL30387 | rna-NM_001178902.1_MUCL30387 | cds-NP_010927.1_MUCL30387 | 86.9 | 88.2 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:169683-170375:+ | gene-YER011W_MUCL30388 | rna-NM_001178902.1_MUCL30388 | cds-NP_010927.1_MUCL30388 | 87.8 | 90.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:168286-169014:+ | gene-YER011W_MUCL39482 | rna-NM_001178902.1_MUCL39482 | cds-NP_010927.1_MUCL39482 | 92.4 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:174154-174882:+ | gene-YER011W_MUCL42920 | rna-NM_001178902.1_MUCL42920 | cds-NP_010927.1_MUCL42920 | 92.6 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:175247-176011:+ | gene-YER011W_NCIM3186 | rna-NM_001178902.1_NCIM3186 | cds-NP_010927.1_NCIM3186 | 96.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:173358-174086:+ | gene-YER011W_NCYC1407 | rna-NM_001178902.1_NCYC1407 | cds-NP_010927.1_NCYC1407 | 92.4 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:177659-178387:+ | gene-YER011W_PE2H3 | rna-NM_001178902.1_PE2H3 | cds-NP_010927.1_PE2H3 | 92.9 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:173574-174302:+ | gene-YER011W_PE2H4 | rna-NM_001178902.1_PE2H4 | cds-NP_010927.1_PE2H4 | 92.9 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:175248-176012:+ | gene-YER011W_S288C | rna-NM_001178902.1_S288C | cds-NP_010927.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:67667-68359:- | gene-YER011W_SA1 | rna-NM_001178902.1_SA1 | cds-NP_010927.1_SA1 | 88.3 | 90.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:170302-171030:+ | gene-YER011W_ThermosaccDry | rna-NM_001178902.1_ThermosaccDry | cds-NP_010927.1_ThermosaccDry | 92.4 | 95.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:169750-170446:+ | gene-YER011W_VR1 | rna-NM_001178902.1_VR1 | cds-NP_010927.1_VR1 | 88.7 | 91.1 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:168297-168917:+ | gene-YER011W_ZTW1 | rna-NM_001178902.1_ZTW1 | cds-NP_010927.1_ZTW1 | 78.4 | 81.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:173047-173811:+ | gene-YER011W_Sparadoxus | rna-NM_001178902.1_Sparadoxus | cds-NP_010927.1_Sparadoxus | 72.8 | 89.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |