Gene name: TIP20
Reference locus (S288C): YGL145W
Gene biotype: protein_coding
Description: Peripheral membrane protein required for COPI vesicle fusion to the ER; mediates Sey1p-independent homotypic ER fusion; prohibits back-fusion of COPII vesicles with the ER; forms a tethering complex with Sec39p and Dsl1p that interacts with ER SNAREs Sec20p and Use1p
Top 10 interactors (score): SEC39 (0.999); UFE1 (0.999); SEC20 (0.999); DSL1 (0.999); USE1 (0.998); SEC22 (0.992); RET2 (0.948); COG3 (0.911); COG4 (0.911); SLY1 (0.903); YPT1 (0.895); SEC27 (0.883); SEC21 (0.837); COG6 (0.827); SEC17 (0.823); EXO70 (0.82); COP1 (0.817); COG8 (0.809); VPS54 (0.797); SEC18 (0.796)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:232830-234935:+ | gene-YGL145W_AKU4011 | rna-NM_001181010.2_AKU4011 | cds-NP_116577.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:170016-172121:- | gene-YGL145W_BG1 | rna-NM_001181010.2_BG1 | cds-NP_116577.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:235006-237111:+ | gene-YGL145W_Bruggeman | rna-NM_001181010.2_Bruggeman | cds-NP_116577.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:230847-232952:+ | gene-YGL145W_CAT1 | rna-NM_001181010.2_CAT1 | cds-NP_116577.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:236212-238317:+ | gene-YGL145W_CBS1585 | rna-NM_001181010.2_CBS1585 | cds-NP_116577.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:230804-232909:+ | gene-YGL145W_CBS436 | rna-NM_001181010.2_CBS436 | cds-NP_116577.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:222422-224527:+ | gene-YGL145W_CBS6412 | rna-NM_001181010.2_CBS6412 | cds-NP_116577.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:230768-232873:+ | gene-YGL145W_CBS6413 | rna-NM_001181010.2_CBS6413 | cds-NP_116577.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:230505-232610:+ | gene-YGL145W_CENPK1137D | rna-NM_001181010.2_CENPK1137D | cds-NP_116577.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:222971-225076:+ | gene-YGL145W_EthanolRed | rna-NM_001181010.2_EthanolRed | cds-NP_116577.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:224217-226322:+ | gene-YGL145W_FaliES1 | rna-NM_001181010.2_FaliES1 | cds-NP_116577.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000090.1:74046-76151:+ | gene-YGL145W_JAY291 | rna-NM_001181010.2_JAY291 | cds-NP_116577.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:232225-234330:+ | gene-YGL145W_MUCL30387 | rna-NM_001181010.2_MUCL30387 | cds-NP_116577.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:235340-237445:+ | gene-YGL145W_MUCL30388 | rna-NM_001181010.2_MUCL30388 | cds-NP_116577.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:232993-235098:+ | gene-YGL145W_MUCL39482 | rna-NM_001181010.2_MUCL39482 | cds-NP_116577.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:236214-238319:+ | gene-YGL145W_MUCL42920 | rna-NM_001181010.2_MUCL42920 | cds-NP_116577.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:230243-232348:+ | gene-YGL145W_NCIM3186 | rna-NM_001181010.2_NCIM3186 | cds-NP_116577.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:224483-226588:+ | gene-YGL145W_NCYC1407 | rna-NM_001181010.2_NCYC1407 | cds-NP_116577.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:226349-228454:+ | gene-YGL145W_PE2H3 | rna-NM_001181010.2_PE2H3 | cds-NP_116577.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:231344-233449:+ | gene-YGL145W_PE2H4 | rna-NM_001181010.2_PE2H4 | cds-NP_116577.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:230243-232348:+ | gene-YGL145W_S288C | rna-NM_001181010.2_S288C | cds-NP_116577.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000081.1:22401-24506:- | gene-YGL145W_SA1 | rna-NM_001181010.2_SA1 | cds-NP_116577.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:224446-226551:+ | gene-YGL145W_ThermosaccDry | rna-NM_001181010.2_ThermosaccDry | cds-NP_116577.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:231263-233368:+ | gene-YGL145W_VR1 | rna-NM_001181010.2_VR1 | cds-NP_116577.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:222553-224658:+ | gene-YGL145W_ZTW1 | rna-NM_001181010.2_ZTW1 | cds-NP_116577.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:228607-230712:+ | gene-YGL145W_Sparadoxus | rna-NM_001181010.2_Sparadoxus | cds-NP_116577.1_Sparadoxus | 87.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |