Gene name: TIM54
Reference locus (S288C): YJL054W
Gene biotype: protein_coding
Description: Mitochondrial import inner membrane translocase subunit TIM54; Component of the mitochondrial TIM22 complex; involved in insertion of polytopic proteins into the inner membrane
Top 10 interactors (score): TIM18 (0.999); TIM22 (0.999); TIM9 (0.999); TIM12 (0.999); SDH3 (0.997); TIM10 (0.997); TIM44 (0.985); TOM70 (0.985); TOM40 (0.983); TOM7 (0.98); TIM23 (0.979); TOM20 (0.976); TOM22 (0.976); TIM17 (0.97); MMM1 (0.965); PAM16 (0.964); TIM8 (0.962); HSP60 (0.952); TOM5 (0.946); TOM6 (0.942)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:317080-318516:+ | gene-YJL054W_AKU4011 | rna-NM_001181487.3_AKU4011 | cds-NP_012481.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:295279-296715:- | gene-YJL054W_BG1 | rna-NM_001181487.3_BG1 | cds-NP_012481.3_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:329663-331099:+ | gene-YJL054W_Bruggeman | rna-NM_001181487.3_Bruggeman | cds-NP_012481.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:334897-336333:+ | gene-YJL054W_CAT1 | rna-NM_001181487.3_CAT1 | cds-NP_012481.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:328734-330170:+ | gene-YJL054W_CBS1585 | rna-NM_001181487.3_CBS1585 | cds-NP_012481.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:346790-348226:+ | gene-YJL054W_CBS436 | rna-NM_001181487.3_CBS436 | cds-NP_012481.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:317838-319274:+ | gene-YJL054W_CBS6412 | rna-NM_001181487.3_CBS6412 | cds-NP_012481.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:319185-320621:+ | gene-YJL054W_CBS6413 | rna-NM_001181487.3_CBS6413 | cds-NP_012481.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:316733-318169:+ | gene-YJL054W_CENPK1137D | rna-NM_001181487.3_CENPK1137D | cds-NP_012481.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:320917-322353:+ | gene-YJL054W_EthanolRed | rna-NM_001181487.3_EthanolRed | cds-NP_012481.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:332492-333928:+ | gene-YJL054W_FaliES1 | rna-NM_001181487.3_FaliES1 | cds-NP_012481.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000138.1:130130-131566:+ | gene-YJL054W_JAY291 | rna-NM_001181487.3_JAY291 | cds-NP_012481.3_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:330818-332254:+ | gene-YJL054W_MUCL30387 | rna-NM_001181487.3_MUCL30387 | cds-NP_012481.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:326856-328292:+ | gene-YJL054W_MUCL30388 | rna-NM_001181487.3_MUCL30388 | cds-NP_012481.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:321488-322924:+ | gene-YJL054W_MUCL39482 | rna-NM_001181487.3_MUCL39482 | cds-NP_012481.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:328183-329619:+ | gene-YJL054W_MUCL42920 | rna-NM_001181487.3_MUCL42920 | cds-NP_012481.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:334244-335680:+ | gene-YJL054W_NCIM3186 | rna-NM_001181487.3_NCIM3186 | cds-NP_012481.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:320184-321620:+ | gene-YJL054W_NCYC1407 | rna-NM_001181487.3_NCYC1407 | cds-NP_012481.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:332584-334020:+ | gene-YJL054W_PE2H3 | rna-NM_001181487.3_PE2H3 | cds-NP_012481.3_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:332229-333665:+ | gene-YJL054W_PE2H4 | rna-NM_001181487.3_PE2H4 | cds-NP_012481.3_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:334265-335701:+ | gene-YJL054W_S288C | rna-NM_001181487.3_S288C | cds-NP_012481.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:130147-131583:+ | gene-YJL054W_SA1 | rna-NM_001181487.3_SA1 | cds-NP_012481.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:325905-327341:+ | gene-YJL054W_ThermosaccDry | rna-NM_001181487.3_ThermosaccDry | cds-NP_012481.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:328395-329831:+ | gene-YJL054W_VR1 | rna-NM_001181487.3_VR1 | cds-NP_012481.3_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:307282-308718:+ | gene-YJL054W_ZTW1 | rna-NM_001181487.3_ZTW1 | cds-NP_012481.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:331364-332806:+ | gene-YJL054W_Sparadoxus | rna-NM_001181487.3_Sparadoxus | cds-NP_012481.3_Sparadoxus | 87.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |