TIM54 (YJL054W)


Gene profile

Gene name: TIM54
Reference locus (S288C): YJL054W
Gene biotype: protein_coding

Description: Mitochondrial import inner membrane translocase subunit TIM54; Component of the mitochondrial TIM22 complex; involved in insertion of polytopic proteins into the inner membrane

Top 10 interactors (score): TIM18 (0.999); TIM22 (0.999); TIM9 (0.999); TIM12 (0.999); SDH3 (0.997); TIM10 (0.997); TIM44 (0.985); TOM70 (0.985); TOM40 (0.983); TOM7 (0.98); TIM23 (0.979); TOM20 (0.976); TOM22 (0.976); TIM17 (0.97); MMM1 (0.965); PAM16 (0.964); TIM8 (0.962); HSP60 (0.952); TOM5 (0.946); TOM6 (0.942)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005304.1:317080-318516:+ gene-YJL054W_AKU4011 rna-NM_001181487.3_AKU4011 cds-NP_012481.3_AKU4011 100.0 100.0 Verified 1 1 1 True True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000190.1:295279-296715:- gene-YJL054W_BG1 rna-NM_001181487.3_BG1 cds-NP_012481.3_BG1 99.5 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005512.1:329663-331099:+ gene-YJL054W_Bruggeman rna-NM_001181487.3_Bruggeman cds-NP_012481.3_Bruggeman 99.7 100.0 Verified 1 1 1 True True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005528.1:334897-336333:+ gene-YJL054W_CAT1 rna-NM_001181487.3_CAT1 cds-NP_012481.3_CAT1 99.7 100.0 Verified 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005368.1:328734-330170:+ gene-YJL054W_CBS1585 rna-NM_001181487.3_CBS1585 cds-NP_012481.3_CBS1585 100.0 100.0 Verified 1 1 1 True True False False False
CBS436 GCA_001738355.1 Sake Asia CM005352.1:346790-348226:+ gene-YJL054W_CBS436 rna-NM_001181487.3_CBS436 cds-NP_012481.3_CBS436 99.7 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005336.1:317838-319274:+ gene-YJL054W_CBS6412 rna-NM_001181487.3_CBS6412 cds-NP_012481.3_CBS6412 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005320.1:319185-320621:+ gene-YJL054W_CBS6413 rna-NM_001181487.3_CBS6413 cds-NP_012481.3_CBS6413 100.0 100.0 Verified 1 1 1 True True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001531.1:316733-318169:+ gene-YJL054W_CENPK1137D rna-NM_001181487.3_CENPK1137D cds-NP_012481.3_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005480.1:320917-322353:+ gene-YJL054W_EthanolRed rna-NM_001181487.3_EthanolRed cds-NP_012481.3_EthanolRed 100.0 100.0 Verified 1 1 1 True True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005544.1:332492-333928:+ gene-YJL054W_FaliES1 rna-NM_001181487.3_FaliES1 cds-NP_012481.3_FaliES1 100.0 100.0 Verified 1 1 1 True True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000138.1:130130-131566:+ gene-YJL054W_JAY291 rna-NM_001181487.3_JAY291 cds-NP_012481.3_JAY291 99.5 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005416.1:330818-332254:+ gene-YJL054W_MUCL30387 rna-NM_001181487.3_MUCL30387 cds-NP_012481.3_MUCL30387 99.7 100.0 Verified 1 1 1 True True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005448.1:326856-328292:+ gene-YJL054W_MUCL30388 rna-NM_001181487.3_MUCL30388 cds-NP_012481.3_MUCL30388 99.6 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005288.1:321488-322924:+ gene-YJL054W_MUCL39482 rna-NM_001181487.3_MUCL39482 cds-NP_012481.3_MUCL39482 100.0 100.0 Verified 1 1 1 True True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005432.1:328183-329619:+ gene-YJL054W_MUCL42920 rna-NM_001181487.3_MUCL42920 cds-NP_012481.3_MUCL42920 99.7 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011819.1:334244-335680:+ gene-YJL054W_NCIM3186 rna-NM_001181487.3_NCIM3186 cds-NP_012481.3_NCIM3186 99.5 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005272.1:320184-321620:+ gene-YJL054W_NCYC1407 rna-NM_001181487.3_NCYC1407 cds-NP_012481.3_NCYC1407 100.0 100.0 Verified 1 1 1 True True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994149.1:332584-334020:+ gene-YJL054W_PE2H3 rna-NM_001181487.3_PE2H3 cds-NP_012481.3_PE2H3 99.5 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999881.1:332229-333665:+ gene-YJL054W_PE2H4 rna-NM_001181487.3_PE2H4 cds-NP_012481.3_PE2H4 99.5 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001142.9:334265-335701:+ gene-YJL054W_S288C rna-NM_001181487.3_S288C cds-NP_012481.3_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000003.1:130147-131583:+ gene-YJL054W_SA1 rna-NM_001181487.3_SA1 cds-NP_012481.3_SA1 99.5 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005496.1:325905-327341:+ gene-YJL054W_ThermosaccDry rna-NM_001181487.3_ThermosaccDry cds-NP_012481.3_ThermosaccDry 100.0 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005464.1:328395-329831:+ gene-YJL054W_VR1 rna-NM_001181487.3_VR1 cds-NP_012481.3_VR1 99.5 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000021.1:307282-308718:+ gene-YJL054W_ZTW1 rna-NM_001181487.3_ZTW1 cds-NP_012481.3_ZTW1 100.0 100.0 Verified 1 1 1 True True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047496.1:331364-332806:+ gene-YJL054W_Sparadoxus rna-NM_001181487.3_Sparadoxus cds-NP_012481.3_Sparadoxus 87.8 100.0 Verified 1 1 1 False True False False False

Additional files