Gene name: TIM50
Reference locus (S288C): YPL063W
Gene biotype: protein_coding
Description: Essential component of the TIM23 complex; acts as receptor for the translocase of the inner mitochondrial membrane (TIM23) complex guiding incoming precursors from the TOM complex; may control the gating of the Tim23p-Tim17p channel
Top 10 interactors (score): PAM18 (0.999); PAM16 (0.999); TIM23 (0.999); TIM44 (0.999); TIM21 (0.999); TIM17 (0.999); TOM40 (0.999); MGE1 (0.997); TOM22 (0.997); PAM17 (0.996); SSC1 (0.995); MGR2 (0.993); TIM13 (0.992); TIM10 (0.979); TIM8 (0.977); TIM9 (0.975); MDJ2 (0.974); DIC1 (0.973); TOM20 (0.968); TOM70 (0.964)
Homologues (species, bitscore): TIMM50 (Homo sapiens, 152.5); Timm50 (Mus musculus, 152.1); timm50 (Danio rerio, 157.9); timm50 (Xenopus tropicalis, 151.8); ttm50 (Drosophila melanogaster, 152.1); scpl-4 (Caenorhabditis elegans, 154.5); TIM50 (Arabidopsis thaliana, 166.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:407660-409090:+ | gene-YPL063W_AKU4011 | rna-NM_001183877.1_AKU4011 | cds-NP_015262.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:613338-614768:+ | gene-YPL063W_BG1 | rna-NM_001183877.1_BG1 | cds-NP_015262.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:483988-485418:+ | gene-YPL063W_Bruggeman | rna-NM_001183877.1_Bruggeman | cds-NP_015262.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:524347-525777:+ | gene-YPL063W_CAT1 | rna-NM_001183877.1_CAT1 | cds-NP_015262.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:411733-413163:+ | gene-YPL063W_CBS1585 | rna-NM_001183877.1_CBS1585 | cds-NP_015262.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:426291-427721:+ | gene-YPL063W_CBS436 | rna-NM_001183877.1_CBS436 | cds-NP_015262.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:415922-417352:+ | gene-YPL063W_CBS6412 | rna-NM_001183877.1_CBS6412 | cds-NP_015262.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:408285-409715:+ | gene-YPL063W_CBS6413 | rna-NM_001183877.1_CBS6413 | cds-NP_015262.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:429903-431333:+ | gene-YPL063W_CENPK1137D | rna-NM_001183877.1_CENPK1137D | cds-NP_015262.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:406024-407454:+ | gene-YPL063W_EthanolRed | rna-NM_001183877.1_EthanolRed | cds-NP_015262.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:413854-415284:+ | gene-YPL063W_FaliES1 | rna-NM_001183877.1_FaliES1 | cds-NP_015262.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000283.1:22460-23890:+ | gene-YPL063W_JAY291 | rna-NM_001183877.1_JAY291 | cds-NP_015262.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:424818-426248:+ | gene-YPL063W_MUCL30387 | rna-NM_001183877.1_MUCL30387 | cds-NP_015262.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:423904-425334:+ | gene-YPL063W_MUCL30388 | rna-NM_001183877.1_MUCL30388 | cds-NP_015262.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:405062-406492:+ | gene-YPL063W_MUCL39482 | rna-NM_001183877.1_MUCL39482 | cds-NP_015262.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:462926-464356:+ | gene-YPL063W_MUCL42920 | rna-NM_001183877.1_MUCL42920 | cds-NP_015262.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:429922-431352:+ | gene-YPL063W_NCIM3186 | rna-NM_001183877.1_NCIM3186 | cds-NP_015262.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:412345-413775:+ | gene-YPL063W_NCYC1407 | rna-NM_001183877.1_NCYC1407 | cds-NP_015262.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:418952-420382:+ | gene-YPL063W_PE2H3 | rna-NM_001183877.1_PE2H3 | cds-NP_015262.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:418573-420003:+ | gene-YPL063W_PE2H4 | rna-NM_001183877.1_PE2H4 | cds-NP_015262.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:429939-431369:+ | gene-YPL063W_S288C | rna-NM_001183877.1_S288C | cds-NP_015262.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000057.1:52048-53478:+ | gene-YPL063W_SA1 | rna-NM_001183877.1_SA1 | cds-NP_015262.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:413654-415084:+ | gene-YPL063W_ThermosaccDry | rna-NM_001183877.1_ThermosaccDry | cds-NP_015262.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:428663-430093:+ | gene-YPL063W_VR1 | rna-NM_001183877.1_VR1 | cds-NP_015262.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:412963-414393:+ | gene-YPL063W_ZTW1 | rna-NM_001183877.1_ZTW1 | cds-NP_015262.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:414690-416123:+ | gene-YPL063W_Sparadoxus | rna-NM_001183877.1_Sparadoxus | cds-NP_015262.1_Sparadoxus | 91.0 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |