Gene name: TIF6
Reference locus (S288C): YPR016C
Gene biotype: protein_coding
Description: Eukaryotic translation initiation factor 6; Constituent of 66S pre-ribosomal particles; has similarity to human translation initiation factor 6 (eIF6); may be involved in the biogenesis and or stability of 60S ribosomal subunits; Belongs to the eIF-6 family
Top 10 interactors (score): RPL35A (0.999); BRX1 (0.999); NMD3 (0.999); HAS1 (0.999); NOP15 (0.999); LSG1 (0.999); NOP2 (0.999); RPF2 (0.999); RPL2B (0.999); YTM1 (0.999); RPL28 (0.999); NOG1 (0.999); RPP0 (0.999); RPL17A (0.999); RLP7 (0.999); RPL2A (0.999); BUD20 (0.999); RPL19B (0.999); RPL34A (0.999); RPL3 (0.999)
Homologues (species, bitscore): EIF6 (Homo sapiens, 384.8); Eif6 (Mus musculus, 384.8); eif6 (Danio rerio, 382.9); eif6 (Xenopus tropicalis, 229.6); eIF6 (Drosophila melanogaster, 388.3); eif-6 (Caenorhabditis elegans, 323.2); eIF6A (Arabidopsis thaliana, 387.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:563993-564730:- | gene-YPR016C_AKU4011 | rna-NM_001184113.1_AKU4011 | cds-NP_015341.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:332404-333141:+ | gene-YPR016C_BG1 | rna-NM_001184113.1_BG1 | cds-NP_015341.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:641654-642391:- | gene-YPR016C_Bruggeman | rna-NM_001184113.1_Bruggeman | cds-NP_015341.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:685152-685889:- | gene-YPR016C_CAT1 | rna-NM_001184113.1_CAT1 | cds-NP_015341.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:567679-568416:- | gene-YPR016C_CBS1585 | rna-NM_001184113.1_CBS1585 | cds-NP_015341.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:582046-582783:- | gene-YPR016C_CBS436 | rna-NM_001184113.1_CBS436 | cds-NP_015341.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:571428-572165:- | gene-YPR016C_CBS6412 | rna-NM_001184113.1_CBS6412 | cds-NP_015341.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:564142-564879:- | gene-YPR016C_CBS6413 | rna-NM_001184113.1_CBS6413 | cds-NP_015341.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:592305-593042:- | gene-YPR016C_CENPK1137D | rna-NM_001184113.1_CENPK1137D | cds-NP_015341.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:561928-562665:- | gene-YPR016C_EthanolRed | rna-NM_001184113.1_EthanolRed | cds-NP_015341.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:569730-570467:- | gene-YPR016C_FaliES1 | rna-NM_001184113.1_FaliES1 | cds-NP_015341.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000116.1:56976-57713:+ | gene-YPR016C_JAY291 | rna-NM_001184113.1_JAY291 | cds-NP_015341.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:582874-583611:- | gene-YPR016C_MUCL30387 | rna-NM_001184113.1_MUCL30387 | cds-NP_015341.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:581527-582264:- | gene-YPR016C_MUCL30388 | rna-NM_001184113.1_MUCL30388 | cds-NP_015341.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:560920-561657:- | gene-YPR016C_MUCL39482 | rna-NM_001184113.1_MUCL39482 | cds-NP_015341.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:622251-622988:- | gene-YPR016C_MUCL42920 | rna-NM_001184113.1_MUCL42920 | cds-NP_015341.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:592315-593052:- | gene-YPR016C_NCIM3186 | rna-NM_001184113.1_NCIM3186 | cds-NP_015341.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:568867-569604:- | gene-YPR016C_NCYC1407 | rna-NM_001184113.1_NCYC1407 | cds-NP_015341.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:575597-576334:- | gene-YPR016C_PE2H3 | rna-NM_001184113.1_PE2H3 | cds-NP_015341.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:575212-575949:- | gene-YPR016C_PE2H4 | rna-NM_001184113.1_PE2H4 | cds-NP_015341.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:592332-593069:- | gene-YPR016C_S288C | rna-NM_001184113.1_S288C | cds-NP_015341.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000026.1:107238-107975:+ | gene-YPR016C_SA1 | rna-NM_001184113.1_SA1 | cds-NP_015341.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:569529-570266:- | gene-YPR016C_ThermosaccDry | rna-NM_001184113.1_ThermosaccDry | cds-NP_015341.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:585765-586502:- | gene-YPR016C_VR1 | rna-NM_001184113.1_VR1 | cds-NP_015341.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:568837-569574:- | gene-YPR016C_ZTW1 | rna-NM_001184113.1_ZTW1 | cds-NP_015341.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:568995-569732:- | gene-YPR016C_Sparadoxus | rna-NM_001184113.1_Sparadoxus | cds-NP_015341.1_Sparadoxus | 94.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |