Gene name: TIF11
Reference locus (S288C): YMR260C
Gene biotype: protein_coding
Description: Translation initiation factor eIF1A; essential protein that forms a complex with Sui1p (eIF1) and the 40S ribosomal subunit and scans for the start codon; C-terminus associates with Fun12p (eIF5B); N terminus interacts with eIF2 and eIF3
Top 10 interactors (score): RPS16A (0.999); RPS5 (0.999); RPS15 (0.999); FUN12 (0.999); SUI1 (0.999); SUI3 (0.999); RPS17A (0.999); RPS20 (0.999); RPG1 (0.999); TIF5 (0.999); RPS2 (0.999); RPS3 (0.999); GCD11 (0.999); SUI2 (0.999); NIP1 (0.998); RPS14B (0.998); RPS17B (0.998); RPS26B (0.998); RPS22A (0.998); RPS13 (0.998)
Homologues (species, bitscore): EIF1AX (Homo sapiens, 183.7); Eif1ax (Mus musculus, 183.7); eif1axb (Danio rerio, 183.3); eif1ax (Xenopus tropicalis, 184.1); eIF-1A (Drosophila melanogaster, 171.0); eif-1.A (Caenorhabditis elegans, 159.1); AT2G04520 (Arabidopsis thaliana, 165.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:828819-829280:- | gene-YMR260C_AKU4011 | rna-NM_001182767.1_AKU4011 | cds-NP_013987.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:125124-125585:+ | gene-YMR260C_BG1 | rna-NM_001182767.1_BG1 | cds-NP_013987.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:774046-774507:- | gene-YMR260C_Bruggeman | rna-NM_001182767.1_Bruggeman | cds-NP_013987.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:777068-777529:- | gene-YMR260C_CAT1 | rna-NM_001182767.1_CAT1 | cds-NP_013987.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:761069-761530:- | gene-YMR260C_CBS1585 | rna-NM_001182767.1_CBS1585 | cds-NP_013987.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:783014-783475:- | gene-YMR260C_CBS436 | rna-NM_001182767.1_CBS436 | cds-NP_013987.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:872633-873094:- | gene-YMR260C_CBS6412 | rna-NM_001182767.1_CBS6412 | cds-NP_013987.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:760180-760641:- | gene-YMR260C_CBS6413 | rna-NM_001182767.1_CBS6413 | cds-NP_013987.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:783785-784246:- | gene-YMR260C_CENPK1137D | rna-NM_001182767.1_CENPK1137D | cds-NP_013987.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:821522-821983:- | gene-YMR260C_EthanolRed | rna-NM_001182767.1_EthanolRed | cds-NP_013987.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:767549-768010:- | gene-YMR260C_FaliES1 | rna-NM_001182767.1_FaliES1 | cds-NP_013987.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:18523-18984:+ | gene-YMR260C_JAY291 | rna-NM_001182767.1_JAY291 | cds-NP_013987.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:767895-768356:- | gene-YMR260C_MUCL30387 | rna-NM_001182767.1_MUCL30387 | cds-NP_013987.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:776488-776949:- | gene-YMR260C_MUCL30388 | rna-NM_001182767.1_MUCL30388 | cds-NP_013987.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:762157-762618:- | gene-YMR260C_MUCL39482 | rna-NM_001182767.1_MUCL39482 | cds-NP_013987.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:770223-770684:- | gene-YMR260C_MUCL42920 | rna-NM_001182767.1_MUCL42920 | cds-NP_013987.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:789332-789793:- | gene-YMR260C_NCIM3186 | rna-NM_001182767.1_NCIM3186 | cds-NP_013987.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:761790-762251:- | gene-YMR260C_NCYC1407 | rna-NM_001182767.1_NCYC1407 | cds-NP_013987.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:771788-772249:- | gene-YMR260C_PE2H3 | rna-NM_001182767.1_PE2H3 | cds-NP_013987.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:772834-773295:- | gene-YMR260C_PE2H4 | rna-NM_001182767.1_PE2H4 | cds-NP_013987.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:789378-789839:- | gene-YMR260C_S288C | rna-NM_001182767.1_S288C | cds-NP_013987.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:18596-19057:+ | gene-YMR260C_SA1 | rna-NM_001182767.1_SA1 | cds-NP_013987.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:763718-764179:- | gene-YMR260C_ThermosaccDry | rna-NM_001182767.1_ThermosaccDry | cds-NP_013987.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:776321-776782:- | gene-YMR260C_VR1 | rna-NM_001182767.1_VR1 | cds-NP_013987.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:178912-179373:- | gene-YMR260C_ZTW1 | rna-NM_001182767.1_ZTW1 | cds-NP_013987.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:782109-782570:- | gene-YMR260C_Sparadoxus | rna-NM_001182767.1_Sparadoxus | cds-NP_013987.1_Sparadoxus | 94.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |