Gene name: THP3
Reference locus (S288C): YPR045C
Gene biotype: protein_coding
Description: SAC3 family protein LENG8/THP3; Protein that may have a role in transcription elongation; forms a complex with Csn12p that is recruited to transcribed genes; possibly involved in splicing based on pre-mRNA accumulation defect for many intron-containing genes
Top 10 interactors (score): YJR084W (0.997); SEM1 (0.777); YLR177W (0.771); KEL3 (0.768); RPN3 (0.754); CSN9 (0.744); KCH1 (0.714); SYH1 (0.709); OPI11 (0.699); RPN12 (0.698); UFD4 (0.644); PCI8 (0.618); YPR174C (0.617); YPL150W (0.617); FIP1 (0.605); SAC1 (0.595); PUS9 (0.579); YEL043W (0.571); NNF2 (0.568); RRI2 (0.558)
Homologues (species, bitscore): LENG8 (Homo sapiens, 151.0); Leng8 (Mus musculus, 144.8); LENG8 (Danio rerio, 160.6); leng8 (Xenopus tropicalis, 150.6); CG6700 (Drosophila melanogaster, 147.5); hpo-10 (Caenorhabditis elegans, 137.5); SAC3A (Arabidopsis thaliana, 136.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:626807-628219:- | gene-YPR045C_AKU4011 | rna-NM_001184142.1_AKU4011 | cds-NP_015370.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:269461-270873:+ | gene-YPR045C_BG1 | rna-NM_001184142.1_BG1 | cds-NP_015370.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:704475-705887:- | gene-YPR045C_Bruggeman | rna-NM_001184142.1_Bruggeman | cds-NP_015370.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:747929-749341:- | gene-YPR045C_CAT1 | rna-NM_001184142.1_CAT1 | cds-NP_015370.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:630493-631905:- | gene-YPR045C_CBS1585 | rna-NM_001184142.1_CBS1585 | cds-NP_015370.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:644871-646283:- | gene-YPR045C_CBS436 | rna-NM_001184142.1_CBS436 | cds-NP_015370.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:634241-635653:- | gene-YPR045C_CBS6412 | rna-NM_001184142.1_CBS6412 | cds-NP_015370.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:627442-628854:- | gene-YPR045C_CBS6413 | rna-NM_001184142.1_CBS6413 | cds-NP_015370.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:655107-656519:- | gene-YPR045C_CENPK1137D | rna-NM_001184142.1_CENPK1137D | cds-NP_015370.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:953997-955409:- | gene-YPR045C_EthanolRed | rna-NM_001184142.1_EthanolRed | cds-NP_015370.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:632634-634046:- | gene-YPR045C_FaliES1 | rna-NM_001184142.1_FaliES1 | cds-NP_015370.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000446.1:4592-6004:- | gene-YPR045C_JAY291 | rna-NM_001184142.1_JAY291 | cds-NP_015370.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:645736-647148:- | gene-YPR045C_MUCL30387 | rna-NM_001184142.1_MUCL30387 | cds-NP_015370.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:644440-645852:- | gene-YPR045C_MUCL30388 | rna-NM_001184142.1_MUCL30388 | cds-NP_015370.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:623750-625162:- | gene-YPR045C_MUCL39482 | rna-NM_001184142.1_MUCL39482 | cds-NP_015370.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:686577-687989:- | gene-YPR045C_MUCL42920 | rna-NM_001184142.1_MUCL42920 | cds-NP_015370.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:655123-656535:- | gene-YPR045C_NCIM3186 | rna-NM_001184142.1_NCIM3186 | cds-NP_015370.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:631680-633092:- | gene-YPR045C_NCYC1407 | rna-NM_001184142.1_NCYC1407 | cds-NP_015370.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:637895-639307:- | gene-YPR045C_PE2H3 | rna-NM_001184142.1_PE2H3 | cds-NP_015370.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:637543-638955:- | gene-YPR045C_PE2H4 | rna-NM_001184142.1_PE2H4 | cds-NP_015370.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:655140-656552:- | gene-YPR045C_S288C | rna-NM_001184142.1_S288C | cds-NP_015370.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000026.1:44138-45550:+ | gene-YPR045C_SA1 | rna-NM_001184142.1_SA1 | cds-NP_015370.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:632409-633821:- | gene-YPR045C_ThermosaccDry | rna-NM_001184142.1_ThermosaccDry | cds-NP_015370.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:648568-649980:- | gene-YPR045C_VR1 | rna-NM_001184142.1_VR1 | cds-NP_015370.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:631641-633053:- | gene-YPR045C_ZTW1 | rna-NM_001184142.1_ZTW1 | cds-NP_015370.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:632407-633819:- | gene-YPR045C_Sparadoxus | rna-NM_001184142.1_Sparadoxus | cds-NP_015370.1_Sparadoxus | 91.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |