Gene name: THP2
Reference locus (S288C): YHR167W
Gene biotype: protein_coding
Description: Subunit of the THO and TREX complexes; THO connects transcription elongation and mitotic recombination, and TREX is recruited to activated genes and couples transcription to mRNA export; involved in telomere maintenance
Top 10 interactors (score): THO2 (0.999); SUB2 (0.999); HPR1 (0.999); MFT1 (0.999); TEX1 (0.993); YRA1 (0.992); GBP2 (0.965); HRB1 (0.933); NPL3 (0.897); MEX67 (0.884); NAB2 (0.852); NUP60 (0.824); CBC2 (0.804); SAC3 (0.796); DBP5 (0.751); YML034C-A (0.746); YDR431W (0.746); SUS1 (0.733); PRP22 (0.7); CDC31 (0.694)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:426436-427221:+ | gene-YHR167W_AKU4011 | rna-NM_001179298.1_AKU4011 | cds-NP_012037.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:90517-91302:- | gene-YHR167W_BG1 | rna-NM_001179298.1_BG1 | cds-NP_012037.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:433677-434462:+ | gene-YHR167W_Bruggeman | rna-NM_001179298.1_Bruggeman | cds-NP_012037.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:429082-429867:+ | gene-YHR167W_CAT1 | rna-NM_001179298.1_CAT1 | cds-NP_012037.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:425892-426677:+ | gene-YHR167W_CBS1585 | rna-NM_001179298.1_CBS1585 | cds-NP_012037.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:423335-424120:+ | gene-YHR167W_CBS436 | rna-NM_001179298.1_CBS436 | cds-NP_012037.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:426346-427131:+ | gene-YHR167W_CBS6412 | rna-NM_001179298.1_CBS6412 | cds-NP_012037.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:426773-427558:+ | gene-YHR167W_CBS6413 | rna-NM_001179298.1_CBS6413 | cds-NP_012037.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:432513-433298:+ | gene-YHR167W_CENPK1137D | rna-NM_001179298.1_CENPK1137D | cds-NP_012037.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:484986-485771:+ | gene-YHR167W_EthanolRed | rna-NM_001179298.1_EthanolRed | cds-NP_012037.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:427429-428214:+ | gene-YHR167W_FaliES1 | rna-NM_001179298.1_FaliES1 | cds-NP_012037.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000017.1:11629-12414:- | gene-YHR167W_JAY291 | rna-NM_001179298.1_JAY291 | cds-NP_012037.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:434748-435533:+ | gene-YHR167W_MUCL30387 | rna-NM_001179298.1_MUCL30387 | cds-NP_012037.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:434187-434972:+ | gene-YHR167W_MUCL30388 | rna-NM_001179298.1_MUCL30388 | cds-NP_012037.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:425803-426588:+ | gene-YHR167W_MUCL39482 | rna-NM_001179298.1_MUCL39482 | cds-NP_012037.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:432410-433195:+ | gene-YHR167W_MUCL42920 | rna-NM_001179298.1_MUCL42920 | cds-NP_012037.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:439224-440009:+ | gene-YHR167W_NCIM3186 | rna-NM_001179298.1_NCIM3186 | cds-NP_012037.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:428262-429047:+ | gene-YHR167W_NCYC1407 | rna-NM_001179298.1_NCYC1407 | cds-NP_012037.1_NCYC1407 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:427404-428189:+ | gene-YHR167W_PE2H3 | rna-NM_001179298.1_PE2H3 | cds-NP_012037.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:434831-435616:+ | gene-YHR167W_PE2H4 | rna-NM_001179298.1_PE2H4 | cds-NP_012037.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:439342-440127:+ | gene-YHR167W_S288C | rna-NM_001179298.1_S288C | cds-NP_012037.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000070.1:11688-12473:- | gene-YHR167W_SA1 | rna-NM_001179298.1_SA1 | cds-NP_012037.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:428512-429297:+ | gene-YHR167W_ThermosaccDry | rna-NM_001179298.1_ThermosaccDry | cds-NP_012037.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:436330-437115:+ | gene-YHR167W_VR1 | rna-NM_001179298.1_VR1 | cds-NP_012037.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:418752-419537:+ | gene-YHR167W_ZTW1 | rna-NM_001179298.1_ZTW1 | cds-NP_012037.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:424845-425627:+ | gene-YHR167W_Sparadoxus | rna-NM_001179298.1_Sparadoxus | cds-NP_012037.1_Sparadoxus | 91.2 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |