Gene name: THO1
Reference locus (S288C): YER063W
Gene biotype: protein_coding
Description: Sap domain-containing ribonucleoprotein; Protein THO1; Conserved nuclear RNA-binding protein; specifically binds to transcribed chromatin in a THO- and RNA-dependent manner, genetically interacts with shuttling hnRNP NAB2; overproduction suppresses transcriptional defect caused by hpr1 mutation
Top 10 interactors (score): SUB2 (0.849); YRA1 (0.82); HPR1 (0.807); THO2 (0.769); YGR126W (0.711); YOR062C (0.695); NAB2 (0.691); YOR333C (0.687); YHR210C (0.676); YJR120W (0.671); ECM23 (0.671); THP2 (0.67); SAC3 (0.661); PAU7 (0.611); YBL029C-A (0.574); BCH1 (0.573); YDR154C (0.571); CRP1 (0.571); YJL015C (0.571); NNR2 (0.563)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:275504-276160:+ | gene-YER063W_AKU4011 | rna-NM_001178954.1_AKU4011 | cds-NP_010985.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:149615-150271:- | gene-YER063W_BG1 | rna-NM_001178954.1_BG1 | cds-NP_010985.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:284816-285472:+ | gene-YER063W_Bruggeman | rna-NM_001178954.1_Bruggeman | cds-NP_010985.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:278459-279115:+ | gene-YER063W_CAT1 | rna-NM_001178954.1_CAT1 | cds-NP_010985.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:275360-276016:+ | gene-YER063W_CBS1585 | rna-NM_001178954.1_CBS1585 | cds-NP_010985.1_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:277270-277926:+ | gene-YER063W_CBS436 | rna-NM_001178954.1_CBS436 | cds-NP_010985.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:274830-275486:+ | gene-YER063W_CBS6412 | rna-NM_001178954.1_CBS6412 | cds-NP_010985.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:280836-281492:+ | gene-YER063W_CBS6413 | rna-NM_001178954.1_CBS6413 | cds-NP_010985.1_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:279560-280216:+ | gene-YER063W_CENPK1137D | rna-NM_001178954.1_CENPK1137D | cds-NP_010985.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:275844-276500:+ | gene-YER063W_EthanolRed | rna-NM_001178954.1_EthanolRed | cds-NP_010985.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:276297-276953:+ | gene-YER063W_FaliES1 | rna-NM_001178954.1_FaliES1 | cds-NP_010985.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000254.1:3716-4372:+ | gene-YER063W_JAY291 | rna-NM_001178954.1_JAY291 | cds-NP_010985.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:280253-280909:+ | gene-YER063W_MUCL30387 | rna-NM_001178954.1_MUCL30387 | cds-NP_010985.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:275923-276579:+ | gene-YER063W_MUCL30388 | rna-NM_001178954.1_MUCL30388 | cds-NP_010985.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:274395-275051:+ | gene-YER063W_MUCL39482 | rna-NM_001178954.1_MUCL39482 | cds-NP_010985.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:281451-282107:+ | gene-YER063W_MUCL42920 | rna-NM_001178954.1_MUCL42920 | cds-NP_010985.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:281709-282365:+ | gene-YER063W_NCIM3186 | rna-NM_001178954.1_NCIM3186 | cds-NP_010985.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:279458-280114:+ | gene-YER063W_NCYC1407 | rna-NM_001178954.1_NCYC1407 | cds-NP_010985.1_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:290111-290767:+ | gene-YER063W_PE2H3 | rna-NM_001178954.1_PE2H3 | cds-NP_010985.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:280052-280708:+ | gene-YER063W_PE2H4 | rna-NM_001178954.1_PE2H4 | cds-NP_010985.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:281710-282366:+ | gene-YER063W_S288C | rna-NM_001178954.1_S288C | cds-NP_010985.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000059.1:68229-68885:+ | gene-YER063W_SA1 | rna-NM_001178954.1_SA1 | cds-NP_010985.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:277093-277749:+ | gene-YER063W_ThermosaccDry | rna-NM_001178954.1_ThermosaccDry | cds-NP_010985.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:276794-277450:+ | gene-YER063W_VR1 | rna-NM_001178954.1_VR1 | cds-NP_010985.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:274273-274929:+ | gene-YER063W_ZTW1 | rna-NM_001178954.1_ZTW1 | cds-NP_010985.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:278216-278866:+ | gene-YER063W_Sparadoxus | rna-NM_001178954.1_Sparadoxus | cds-NP_010985.1_Sparadoxus | 84.8 | 98.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |