TGA1 (YNCA0004W)

Gene profile

Gene name: TGA1
Reference locus (S288C): YNCA0004W
Gene biotype: tRNA

Description: Unknown

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005295.1:145766-145838:+ gene-YNCA0004W_AKU4011 rna-YNCA0004W_AKU4011 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
BG1 GCA_001932575.1 Bioethanol South America MSHP01000193.1:427-499:+ gene-YNCA0004W_BG1 rna-YNCA0004W_BG1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005503.1:161780-161852:+ gene-YNCA0004W_1_Bruggeman Unknown Unknown 100.0 100.0 Unannotated 2 2 0 Unknown Unknown non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005503.1:160989-161061:+ gene-YNCA0004W_Bruggeman rna-YNCA0004W_Bruggeman Unknown 100.0 100.0 Unannotated 2 1 0 Unknown False non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005519.1:147404-147476:+ gene-YNCA0004W_CAT1 rna-YNCA0004W_CAT1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS1585 GCA_001738375.1 Sake Asia CM005359.1:158464-158536:+ gene-YNCA0004W_CBS1585 rna-YNCA0004W_CBS1585 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS436 GCA_001738355.1 Sake Asia CM005343.1:158778-158850:+ gene-YNCA0004W_CBS436 rna-YNCA0004W_CBS436 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6412 GCA_001738345.1 Sake Asia CM005338.1:771208-771280:+ gene-YNCA0004W_CBS6412 rna-YNCA0004W_CBS6412 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6413 GCA_001738265.1 Sake Asia CM005311.1:156732-156804:+ gene-YNCA0004W_CBS6413 rna-YNCA0004W_CBS6413 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001522.1:160243-160315:+ gene-YNCA0004W_CENPK1137D rna-YNCA0004W_CENPK1137D Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
EthanolRed GCA_001738615.1 Bioethanol Asia CM005471.1:146320-146392:+ gene-YNCA0004W_EthanolRed rna-YNCA0004W_EthanolRed Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
FaliES1 GCA_001738715.1 Bioethanol Asia CM005535.1:161981-162053:+ gene-YNCA0004W_FaliES1 rna-YNCA0004W_FaliES1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000304.1:118-190:+ gene-YNCA0004W_JAY291 rna-YNCA0004W_JAY291 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005407.1:162317-162389:+ gene-YNCA0004W_MUCL30387 rna-YNCA0004W_MUCL30387 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe MBVW01000303.1:125-197:+ gene-YNCA0004W_MUCL30388 rna-YNCA0004W_MUCL30388 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL39482 GCA_001738235.1 Sake Asia CM005279.1:157720-157792:+ gene-YNCA0004W_MUCL39482 rna-YNCA0004W_MUCL39482 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005423.1:160118-160190:+ gene-YNCA0004W_MUCL42920 rna-YNCA0004W_MUCL42920 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011814.1:312022-312094:- gene-YNCA0004W_NCIM3186 rna-YNCA0004W_NCIM3186 Unknown 98.6 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCYC1407 GCA_001738225.1 Sake Asia CM005263.1:145130-145202:+ gene-YNCA0004W_NCYC1407 rna-YNCA0004W_NCYC1407 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H3 GCA_905220325.1 Bioethanol South America HG994140.1:153319-153391:+ gene-YNCA0004W_PE2H3 rna-YNCA0004W_PE2H3 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H4 GCA_905220315.1 Bioethanol South America LR999872.1:153038-153110:+ gene-YNCA0004W_PE2H4 rna-YNCA0004W_PE2H4 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
S288C GCF_000146045.2 Laboratory Not applicable NC_001133.9:166267-166339:+ gene-YNCA0004W_S288C rna-YNCA0004W_S288C Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
SA1 GCA_004114265.1 Bioethanol South America SDIA01000100.1:19069-19141:+ gene-YNCA0004W_SA1 rna-YNCA0004W_SA1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005487.1:160986-161058:+ gene-YNCA0004W_ThermosaccDry rna-YNCA0004W_ThermosaccDry Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005455.1:165542-165614:+ gene-YNCA0004W_VR1 rna-YNCA0004W_VR1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000002.1:132809-132881:+ gene-YNCA0004W_ZTW1 rna-YNCA0004W_ZTW1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047487.1:150457-150529:+ gene-YNCA0004W_Sparadoxus rna-YNCA0004W_Sparadoxus Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding

Additional files