Gene name: TFG2
Reference locus (S288C): YGR005C
Gene biotype: protein_coding
Description: TFIIF (Transcription Factor II) middle subunit; involved in both transcription initiation and elongation of RNA polymerase II; homologous to human RAP30; Belongs to the TFIIF beta subunit family
Top 10 interactors (score): SUA7 (0.999); FCP1 (0.999); TAF14 (0.999); RPB2 (0.999); RPB4 (0.999); RPB7 (0.999); TFA1 (0.999); RPB3 (0.999); TFG1 (0.999); SSL2 (0.999); RPO21 (0.999); TFA2 (0.999); RPB9 (0.999); RPB5 (0.999); RPC10 (0.999); DST1 (0.998); RPB11 (0.998); SPT15 (0.997); RPO26 (0.995); TFB3 (0.994)
Homologues (species, bitscore): GTF2F2 (Homo sapiens, 63.2); Gtf2f2 (Mus musculus, 65.1); gtf2f2a (Danio rerio, 65.5); TfIIFbeta (Drosophila melanogaster, 62.0); AT1G75510 (Arabidopsis thaliana, 56.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:506704-507906:- | gene-YGR005C_AKU4011 | rna-NM_001181134.3_AKU4011 | cds-NP_011519.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000060.1:68203-69405:+ | gene-YGR005C_BG1 | rna-NM_001181134.3_BG1 | cds-NP_011519.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:507673-508875:- | gene-YGR005C_Bruggeman | rna-NM_001181134.3_Bruggeman | cds-NP_011519.3_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:506466-507668:- | gene-YGR005C_CAT1 | rna-NM_001181134.3_CAT1 | cds-NP_011519.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:508197-509399:- | gene-YGR005C_CBS1585 | rna-NM_001181134.3_CBS1585 | cds-NP_011519.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:502560-503762:- | gene-YGR005C_CBS436 | rna-NM_001181134.3_CBS436 | cds-NP_011519.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:500794-501996:- | gene-YGR005C_CBS6412 | rna-NM_001181134.3_CBS6412 | cds-NP_011519.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:504870-506072:- | gene-YGR005C_CBS6413 | rna-NM_001181134.3_CBS6413 | cds-NP_011519.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:504475-505677:- | gene-YGR005C_CENPK1137D | rna-NM_001181134.3_CENPK1137D | cds-NP_011519.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:495075-496277:- | gene-YGR005C_EthanolRed | rna-NM_001181134.3_EthanolRed | cds-NP_011519.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:498325-499527:- | gene-YGR005C_FaliES1 | rna-NM_001181134.3_FaliES1 | cds-NP_011519.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000020.1:36959-38161:- | gene-YGR005C_JAY291 | rna-NM_001181134.3_JAY291 | cds-NP_011519.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:504895-506097:- | gene-YGR005C_MUCL30387 | rna-NM_001181134.3_MUCL30387 | cds-NP_011519.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:507446-508648:- | gene-YGR005C_MUCL30388 | rna-NM_001181134.3_MUCL30388 | cds-NP_011519.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:504016-505218:- | gene-YGR005C_MUCL39482 | rna-NM_001181134.3_MUCL39482 | cds-NP_011519.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:513447-514649:- | gene-YGR005C_MUCL42920 | rna-NM_001181134.3_MUCL42920 | cds-NP_011519.3_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:504657-505859:- | gene-YGR005C_NCIM3186 | rna-NM_001181134.3_NCIM3186 | cds-NP_011519.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:498057-499259:- | gene-YGR005C_NCYC1407 | rna-NM_001181134.3_NCYC1407 | cds-NP_011519.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:500727-501929:- | gene-YGR005C_PE2H3 | rna-NM_001181134.3_PE2H3 | cds-NP_011519.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:505777-506979:- | gene-YGR005C_PE2H4 | rna-NM_001181134.3_PE2H4 | cds-NP_011519.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:504657-505859:- | gene-YGR005C_S288C | rna-NM_001181134.3_S288C | cds-NP_011519.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000021.1:49728-50930:+ | gene-YGR005C_SA1 | rna-NM_001181134.3_SA1 | cds-NP_011519.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:517651-518853:- | gene-YGR005C_ThermosaccDry | rna-NM_001181134.3_ThermosaccDry | cds-NP_011519.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:607942-609144:- | gene-YGR005C_VR1 | rna-NM_001181134.3_VR1 | cds-NP_011519.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:496248-497450:- | gene-YGR005C_ZTW1 | rna-NM_001181134.3_ZTW1 | cds-NP_011519.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:505760-506962:- | gene-YGR005C_Sparadoxus | rna-NM_001181134.3_Sparadoxus | cds-NP_011519.3_Sparadoxus | 92.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |