Gene name: TFC4
Reference locus (S288C): YGR047C
Gene biotype: protein_coding
Description: Subunit of RNA polymerase III transcription initiation factor complex; one of six subunits of RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauA domain of TFIIIC that binds BoxA DNA promoter sites of tRNA and similar genes; has TPR motifs; human homolog is TFIIIC-102
Top 10 interactors (score): CFT2 (0.999); CFT1 (0.999); TFC7 (0.999); RNA15 (0.999); TFC1 (0.999); BRF1 (0.999); TFC3 (0.999); TFC6 (0.999); BDP1 (0.999); YSH1 (0.999); TFC8 (0.996); SPT15 (0.996); RPO31 (0.974); RPC82 (0.96); RPC53 (0.957); PZF1 (0.953); RET1 (0.95); RPC10 (0.942); RPC34 (0.925); PTA1 (0.922)
Homologues (species, bitscore): GTF3C3 (Homo sapiens, 154.5); Gtf3c3 (Mus musculus, 157.5); gtf3c3 (Danio rerio, 87.0); gtf3c3 (Xenopus tropicalis, 166.8); CG8950 (Drosophila melanogaster, 58.5); tag-315 (Caenorhabditis elegans, 64.7); AT1G17680 (Arabidopsis thaliana, 75.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:570092-573169:- | gene-YGR047C_AKU4011 | rna-NM_001181176.3_AKU4011 | cds-NP_011561.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000060.1:2664-5741:+ | gene-YGR047C_BG1 | rna-NM_001181176.3_BG1 | cds-NP_011561.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:572384-575461:- | gene-YGR047C_Bruggeman | rna-NM_001181176.3_Bruggeman | cds-NP_011561.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:570790-573867:- | gene-YGR047C_CAT1 | rna-NM_001181176.3_CAT1 | cds-NP_011561.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:571405-574482:- | gene-YGR047C_CBS1585 | rna-NM_001181176.3_CBS1585 | cds-NP_011561.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:572700-575777:- | gene-YGR047C_CBS436 | rna-NM_001181176.3_CBS436 | cds-NP_011561.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:564201-567278:- | gene-YGR047C_CBS6412 | rna-NM_001181176.3_CBS6412 | cds-NP_011561.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:568201-571278:- | gene-YGR047C_CBS6413 | rna-NM_001181176.3_CBS6413 | cds-NP_011561.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:586111-589188:- | gene-YGR047C_CENPK1137D | rna-NM_001181176.3_CENPK1137D | cds-NP_011561.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:558334-561411:- | gene-YGR047C_EthanolRed | rna-NM_001181176.3_EthanolRed | cds-NP_011561.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:561818-564895:- | gene-YGR047C_FaliES1 | rna-NM_001181176.3_FaliES1 | cds-NP_011561.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000435.1:12787-15864:- | gene-YGR047C_JAY291 | rna-NM_001181176.3_JAY291 | cds-NP_011561.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:569017-572094:- | gene-YGR047C_MUCL30387 | rna-NM_001181176.3_MUCL30387 | cds-NP_011561.3_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:572413-575490:- | gene-YGR047C_MUCL30388 | rna-NM_001181176.3_MUCL30388 | cds-NP_011561.3_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:567223-570300:- | gene-YGR047C_MUCL39482 | rna-NM_001181176.3_MUCL39482 | cds-NP_011561.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:577035-580112:- | gene-YGR047C_MUCL42920 | rna-NM_001181176.3_MUCL42920 | cds-NP_011561.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:586392-589469:- | gene-YGR047C_NCIM3186 | rna-NM_001181176.3_NCIM3186 | cds-NP_011561.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:561418-564495:- | gene-YGR047C_NCYC1407 | rna-NM_001181176.3_NCYC1407 | cds-NP_011561.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:564688-567765:- | gene-YGR047C_PE2H3 | rna-NM_001181176.3_PE2H3 | cds-NP_011561.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:569795-572872:- | gene-YGR047C_PE2H4 | rna-NM_001181176.3_PE2H4 | cds-NP_011561.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:586392-589469:- | gene-YGR047C_S288C | rna-NM_001181176.3_S288C | cds-NP_011561.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:12844-15921:- | gene-YGR047C_SA1 | rna-NM_001181176.3_SA1 | cds-NP_011561.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:581155-584232:- | gene-YGR047C_ThermosaccDry | rna-NM_001181176.3_ThermosaccDry | cds-NP_011561.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:678066-681143:- | gene-YGR047C_VR1 | rna-NM_001181176.3_VR1 | cds-NP_011561.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000015.1:36633-39710:- | gene-YGR047C_ZTW1 | rna-NM_001181176.3_ZTW1 | cds-NP_011561.3_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:571605-574676:- | gene-YGR047C_Sparadoxus | rna-NM_001181176.3_Sparadoxus | cds-NP_011561.3_Sparadoxus | 90.0 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |