Gene name: TFC3
Reference locus (S288C): YAL001C
Gene biotype: protein_coding
Description: Subunit of RNA polymerase III transcription initiation factor complex; part of the TauB domain of TFIIIC that binds DNA at the BoxB promoter sites of tRNA and similar genes; cooperates with Tfc6p in DNA binding; largest of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC)
Top 10 interactors (score): TFC1 (0.999); TFC6 (0.999); TFC4 (0.999); TFC7 (0.998); TFC8 (0.998); BDP1 (0.993); BRF1 (0.987); SPT15 (0.98); PZF1 (0.909); RPC31 (0.882); RPC10 (0.847); RPC53 (0.822); RPO31 (0.818); RPC82 (0.816); RET1 (0.786); YLR001C (0.784); RPC17 (0.782); YDR246W-A (0.746); RPC11 (0.735); YGR109W-B (0.67)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005295.1:133022-136594:- | gene-YAL001C_AKU4011 | rna-NM_001178148.1_AKU4011 | cds-NP_009400.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000200.1:937-4509:+ | gene-YAL001C_BG1 | rna-NM_001178148.1_BG1 | cds-NP_009400.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:147827-151399:- | gene-YAL001C_Bruggeman | rna-NM_001178148.1_Bruggeman | cds-NP_009400.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005519.1:134410-137982:- | gene-YAL001C_CAT1 | rna-NM_001178148.1_CAT1 | cds-NP_009400.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005359.1:145719-149291:- | gene-YAL001C_CBS1585 | rna-NM_001178148.1_CBS1585 | cds-NP_009400.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005343.1:146029-149601:- | gene-YAL001C_CBS436 | rna-NM_001178148.1_CBS436 | cds-NP_009400.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:758461-762033:- | gene-YAL001C_CBS6412 | rna-NM_001178148.1_CBS6412 | cds-NP_009400.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005311.1:143988-147560:- | gene-YAL001C_CBS6413 | rna-NM_001178148.1_CBS6413 | cds-NP_009400.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001522.1:147501-151073:- | gene-YAL001C_CENPK1137D | rna-NM_001178148.1_CENPK1137D | cds-NP_009400.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005471.1:133582-137154:- | gene-YAL001C_EthanolRed | rna-NM_001178148.1_EthanolRed | cds-NP_009400.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005535.1:149237-152809:- | gene-YAL001C_FaliES1 | rna-NM_001178148.1_FaliES1 | cds-NP_009400.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000248.1:6611-10183:- | gene-YAL001C_JAY291 | rna-NM_001178148.1_JAY291 | cds-NP_009400.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005407.1:148731-152303:- | gene-YAL001C_MUCL30387 | rna-NM_001178148.1_MUCL30387 | cds-NP_009400.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005439.1:146228-149800:- | gene-YAL001C_MUCL30388 | rna-NM_001178148.1_MUCL30388 | cds-NP_009400.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005279.1:144995-148567:- | gene-YAL001C_MUCL39482 | rna-NM_001178148.1_MUCL39482 | cds-NP_009400.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:147127-150699:- | gene-YAL001C_MUCL42920 | rna-NM_001178148.1_MUCL42920 | cds-NP_009400.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:147471-151043:- | gene-YAL001C_NCIM3186 | rna-NM_001178148.1_NCIM3186 | cds-NP_009400.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005263.1:132383-135955:- | gene-YAL001C_NCYC1407 | rna-NM_001178148.1_NCYC1407 | cds-NP_009400.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:134309-137881:- | gene-YAL001C_PE2H3 | rna-NM_001178148.1_PE2H3 | cds-NP_009400.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:134028-137600:- | gene-YAL001C_PE2H4 | rna-NM_001178148.1_PE2H4 | cds-NP_009400.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:147594-151166:- | gene-YAL001C_S288C | rna-NM_001178148.1_S288C | cds-NP_009400.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000100.1:6326-9898:- | gene-YAL001C_SA1 | rna-NM_001178148.1_SA1 | cds-NP_009400.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005487.1:148246-151818:- | gene-YAL001C_ThermosaccDry | rna-NM_001178148.1_ThermosaccDry | cds-NP_009400.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005455.1:152800-156372:- | gene-YAL001C_VR1 | rna-NM_001178148.1_VR1 | cds-NP_009400.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000002.1:120067-123639:- | gene-YAL001C_ZTW1 | rna-NM_001178148.1_ZTW1 | cds-NP_009400.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047487.1:137630-141202:- | gene-YAL001C_Sparadoxus | rna-NM_001178148.1_Sparadoxus | cds-NP_009400.1_Sparadoxus | 89.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |