Gene name: TFC1
Reference locus (S288C): YBR123C
Gene biotype: protein_coding
Description: Subunit of RNA polymerase III transcription initiation factor complex; one of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauA globular domain of TFIIIC that binds DNA at the BoxA promoter sites of tRNA and similar genes; human homolog is TFIIIC-63
Top 10 interactors (score): TFC6 (0.999); BDP1 (0.999); TFC3 (0.999); TFC7 (0.999); TFC4 (0.999); BRF1 (0.998); TFC8 (0.998); SPT15 (0.988); TAF10 (0.957); ALG9 (0.947); RPO31 (0.935); RPC53 (0.931); PZF1 (0.92); RPC82 (0.905); RPC37 (0.861); UBC6 (0.856); RET1 (0.856); RPC31 (0.825); PML39 (0.823); RPC10 (0.818)
Homologues (species, bitscore): GTF3C5 (Homo sapiens, 53.9); Gtf3c5 (Mus musculus, 52.0); gtf3c5 (Danio rerio, 60.8); l(2)37Cd (Drosophila melanogaster, 52.8); AT5G24450 (Arabidopsis thaliana, 55.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:467624-469573:- | gene-YBR123C_AKU4011 | rna-NM_001178471.3_AKU4011 | cds-NP_009681.3_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:458164-460113:- | gene-YBR123C_BG1 | rna-NM_001178471.3_BG1 | cds-NP_009681.3_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:469400-471349:- | gene-YBR123C_Bruggeman | rna-NM_001178471.3_Bruggeman | cds-NP_009681.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:472568-474517:- | gene-YBR123C_CAT1 | rna-NM_001178471.3_CAT1 | cds-NP_009681.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:459408-461357:- | gene-YBR123C_CBS1585 | rna-NM_001178471.3_CBS1585 | cds-NP_009681.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:467479-469428:- | gene-YBR123C_CBS436 | rna-NM_001178471.3_CBS436 | cds-NP_009681.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:557271-559220:- | gene-YBR123C_CBS6412 | rna-NM_001178471.3_CBS6412 | cds-NP_009681.3_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:465036-466985:- | gene-YBR123C_CBS6413 | rna-NM_001178471.3_CBS6413 | cds-NP_009681.3_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:478514-480462:- | gene-YBR123C_CENPK1137D | rna-NM_001178471.3_CENPK1137D | cds-NP_009681.3_CENPK1137D | 99.9 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:593646-595595:- | gene-YBR123C_EthanolRed | rna-NM_001178471.3_EthanolRed | cds-NP_009681.3_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:483663-485612:- | gene-YBR123C_FaliES1 | rna-NM_001178471.3_FaliES1 | cds-NP_009681.3_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000444.1:7070-9018:- | gene-YBR123C_JAY291 | rna-NM_001178471.3_JAY291 | cds-NP_009681.3_JAY291 | 99.5 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:472308-474257:- | gene-YBR123C_MUCL30387 | rna-NM_001178471.3_MUCL30387 | cds-NP_009681.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:470660-472609:- | gene-YBR123C_MUCL30388 | rna-NM_001178471.3_MUCL30388 | cds-NP_009681.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:457801-459750:- | gene-YBR123C_MUCL39482 | rna-NM_001178471.3_MUCL39482 | cds-NP_009681.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:467715-469664:- | gene-YBR123C_MUCL42920 | rna-NM_001178471.3_MUCL42920 | cds-NP_009681.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:484539-486488:- | gene-YBR123C_NCIM3186 | rna-NM_001178471.3_NCIM3186 | cds-NP_009681.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:460329-462278:- | gene-YBR123C_NCYC1407 | rna-NM_001178471.3_NCYC1407 | cds-NP_009681.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:472908-474857:- | gene-YBR123C_PE2H3 | rna-NM_001178471.3_PE2H3 | cds-NP_009681.3_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:470584-472533:- | gene-YBR123C_PE2H4 | rna-NM_001178471.3_PE2H4 | cds-NP_009681.3_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:484742-486691:- | gene-YBR123C_S288C | rna-NM_001178471.3_S288C | cds-NP_009681.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000032.1:5841-7790:- | gene-YBR123C_SA1 | rna-NM_001178471.3_SA1 | cds-NP_009681.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:482670-484619:- | gene-YBR123C_ThermosaccDry | rna-NM_001178471.3_ThermosaccDry | cds-NP_009681.3_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:464162-466111:- | gene-YBR123C_VR1 | rna-NM_001178471.3_VR1 | cds-NP_009681.3_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:457817-459766:- | gene-YBR123C_ZTW1 | rna-NM_001178471.3_ZTW1 | cds-NP_009681.3_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:495063-497012:- | gene-YBR123C_Sparadoxus | rna-NM_001178471.3_Sparadoxus | cds-NP_009681.3_Sparadoxus | 90.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |