Gene name: TFB6
Reference locus (S288C): YOR352W
Gene biotype: protein_coding
Description: Uncharacterized protein YOR352W; Subunit of TFIIH complex; facilities dissociation of the Ssl2p helices from TFIIH; expression levels regulated by Arg5,6p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus
Top 10 interactors (score): SSL2 (0.999); TFB3 (0.997); CCL1 (0.991); TFA2 (0.974); SSL1 (0.968); KIN28 (0.965); TFA1 (0.942); RAD3 (0.925); TFB1 (0.909); TFB5 (0.902); CTK1 (0.9); CTK2 (0.9); TFB2 (0.9); TFB4 (0.9); CTK3 (0.9); TFG1 (0.651); GLN4 (0.629); RGR1 (0.615); SUA7 (0.571); DST1 (0.56)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:983799-984830:+ | gene-YOR352W_AKU4011 | rna-NM_001183772.1_AKU4011 | cds-NP_014997.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000078.1:20980-22011:+ | gene-YOR352W_BG1 | rna-NM_001183772.1_BG1 | cds-NP_014997.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:968615-969646:+ | gene-YOR352W_Bruggeman | rna-NM_001183772.1_Bruggeman | cds-NP_014997.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:968445-969476:+ | gene-YOR352W_CAT1 | rna-NM_001183772.1_CAT1 | cds-NP_014997.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:968209-969240:+ | gene-YOR352W_CBS1585 | rna-NM_001183772.1_CBS1585 | cds-NP_014997.1_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:963022-964053:+ | gene-YOR352W_CBS436 | rna-NM_001183772.1_CBS436 | cds-NP_014997.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:197509-198540:+ | gene-YOR352W_CBS6412 | rna-NM_001183772.1_CBS6412 | cds-NP_014997.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:972481-973512:+ | gene-YOR352W_CBS6413 | rna-NM_001183772.1_CBS6413 | cds-NP_014997.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:997001-998032:+ | gene-YOR352W_CENPK1137D | rna-NM_001183772.1_CENPK1137D | cds-NP_014997.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:212503-213534:+ | gene-YOR352W_EthanolRed | rna-NM_001183772.1_EthanolRed | cds-NP_014997.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:965332-966363:+ | gene-YOR352W_FaliES1 | rna-NM_001183772.1_FaliES1 | cds-NP_014997.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000078.1:39303-40334:- | gene-YOR352W_JAY291 | rna-NM_001183772.1_JAY291 | cds-NP_014997.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:977944-978975:+ | gene-YOR352W_MUCL30387 | rna-NM_001183772.1_MUCL30387 | cds-NP_014997.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:985960-986991:+ | gene-YOR352W_MUCL30388 | rna-NM_001183772.1_MUCL30388 | cds-NP_014997.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:974744-975775:+ | gene-YOR352W_MUCL39482 | rna-NM_001183772.1_MUCL39482 | cds-NP_014997.1_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:982347-983378:+ | gene-YOR352W_MUCL42920 | rna-NM_001183772.1_MUCL42920 | cds-NP_014997.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:997102-998133:+ | gene-YOR352W_NCIM3186 | rna-NM_001183772.1_NCIM3186 | cds-NP_014997.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:975753-976784:+ | gene-YOR352W_NCYC1407 | rna-NM_001183772.1_NCYC1407 | cds-NP_014997.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:971010-972041:+ | gene-YOR352W_PE2H3 | rna-NM_001183772.1_PE2H3 | cds-NP_014997.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:987362-988393:+ | gene-YOR352W_PE2H4 | rna-NM_001183772.1_PE2H4 | cds-NP_014997.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:997213-998244:+ | gene-YOR352W_S288C | rna-NM_001183772.1_S288C | cds-NP_014997.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000016.1:101668-102699:+ | gene-YOR352W_SA1 | rna-NM_001183772.1_SA1 | cds-NP_014997.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:964502-965533:+ | gene-YOR352W_ThermosaccDry | rna-NM_001183772.1_ThermosaccDry | cds-NP_014997.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:1025762-1026793:+ | gene-YOR352W_VR1 | rna-NM_001183772.1_VR1 | cds-NP_014997.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:697234-698265:+ | gene-YOR352W_ZTW1 | rna-NM_001183772.1_ZTW1 | cds-NP_014997.1_ZTW1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:970773-971801:+ | gene-YOR352W_Sparadoxus | rna-NM_001183772.1_Sparadoxus | cds-NP_014997.1_Sparadoxus | 90.4 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |