Gene name: TFB4
Reference locus (S288C): YPR056W
Gene biotype: protein_coding
Description: Subunit of TFIIH complex; involved in transcription initiation, similar to 34 kDa subunit of human TFIIH; interacts with Ssl1p
Top 10 interactors (score): TFB5 (0.999); TFB2 (0.999); RAD3 (0.999); CCL1 (0.999); TFB1 (0.999); SSL2 (0.999); TFB3 (0.999); SSL1 (0.999); KIN28 (0.999); TFA2 (0.993); TFA1 (0.989); RAD14 (0.974); TFG1 (0.964); SUA7 (0.955); CTK2 (0.933); RPO26 (0.925); RAD23 (0.918); TOA2 (0.913); RPO21 (0.907); TFG2 (0.903)
Homologues (species, bitscore): GTF2H3 (Homo sapiens, 144.1); Gtf2h3 (Mus musculus, 136.3); gtf2h3 (Danio rerio, 129.4); Tfb4 (Drosophila melanogaster, 120.2); ZK1128.4 (Caenorhabditis elegans, 100.9); AT1G18340 (Arabidopsis thaliana, 127.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:642791-643807:+ | gene-YPR056W_AKU4011 | rna-NM_001184153.1_AKU4011 | cds-NP_015381.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:253872-254888:- | gene-YPR056W_BG1 | rna-NM_001184153.1_BG1 | cds-NP_015381.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:720460-721476:+ | gene-YPR056W_Bruggeman | rna-NM_001184153.1_Bruggeman | cds-NP_015381.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:763914-764930:+ | gene-YPR056W_CAT1 | rna-NM_001184153.1_CAT1 | cds-NP_015381.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:646477-647493:+ | gene-YPR056W_CBS1585 | rna-NM_001184153.1_CBS1585 | cds-NP_015381.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:660856-661872:+ | gene-YPR056W_CBS436 | rna-NM_001184153.1_CBS436 | cds-NP_015381.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:650225-651241:+ | gene-YPR056W_CBS6412 | rna-NM_001184153.1_CBS6412 | cds-NP_015381.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:643426-644442:+ | gene-YPR056W_CBS6413 | rna-NM_001184153.1_CBS6413 | cds-NP_015381.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:671091-672107:+ | gene-YPR056W_CENPK1137D | rna-NM_001184153.1_CENPK1137D | cds-NP_015381.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:969982-970998:+ | gene-YPR056W_EthanolRed | rna-NM_001184153.1_EthanolRed | cds-NP_015381.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:648619-649635:+ | gene-YPR056W_FaliES1 | rna-NM_001184153.1_FaliES1 | cds-NP_015381.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000446.1:20577-21593:+ | gene-YPR056W_JAY291 | rna-NM_001184153.1_JAY291 | cds-NP_015381.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:661721-662737:+ | gene-YPR056W_MUCL30387 | rna-NM_001184153.1_MUCL30387 | cds-NP_015381.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:660425-661441:+ | gene-YPR056W_MUCL30388 | rna-NM_001184153.1_MUCL30388 | cds-NP_015381.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:639734-640750:+ | gene-YPR056W_MUCL39482 | rna-NM_001184153.1_MUCL39482 | cds-NP_015381.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:702562-703578:+ | gene-YPR056W_MUCL42920 | rna-NM_001184153.1_MUCL42920 | cds-NP_015381.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:671109-672125:+ | gene-YPR056W_NCIM3186 | rna-NM_001184153.1_NCIM3186 | cds-NP_015381.1_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:647664-648680:+ | gene-YPR056W_NCYC1407 | rna-NM_001184153.1_NCYC1407 | cds-NP_015381.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:653880-654896:+ | gene-YPR056W_PE2H3 | rna-NM_001184153.1_PE2H3 | cds-NP_015381.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:653528-654544:+ | gene-YPR056W_PE2H4 | rna-NM_001184153.1_PE2H4 | cds-NP_015381.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:671126-672142:+ | gene-YPR056W_S288C | rna-NM_001184153.1_S288C | cds-NP_015381.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000026.1:28549-29565:- | gene-YPR056W_SA1 | rna-NM_001184153.1_SA1 | cds-NP_015381.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:648394-649410:+ | gene-YPR056W_ThermosaccDry | rna-NM_001184153.1_ThermosaccDry | cds-NP_015381.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:664553-665569:+ | gene-YPR056W_VR1 | rna-NM_001184153.1_VR1 | cds-NP_015381.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:647625-648641:+ | gene-YPR056W_ZTW1 | rna-NM_001184153.1_ZTW1 | cds-NP_015381.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:648414-649430:+ | gene-YPR056W_Sparadoxus | rna-NM_001184153.1_Sparadoxus | cds-NP_015381.1_Sparadoxus | 92.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |