Gene name: TFB3
Reference locus (S288C): YDR460W
Gene biotype: protein_coding
Description: Subunit of TFIIH and nucleotide excision repair factor 3 complexes; involved in transcription initiation, required for nucleotide excision repair; ring finger protein similar to mammalian CAK and TFIIH subunit
Top 10 interactors (score): SSL2 (0.999); SSL1 (0.999); KIN28 (0.999); TFB1 (0.999); CCL1 (0.999); TFB4 (0.999); RAD3 (0.999); TFB5 (0.999); TFA2 (0.999); TFB2 (0.999); RPO21 (0.998); TFA1 (0.997); TFB6 (0.997); TFG2 (0.994); SUA7 (0.991); TFG1 (0.991); RPB7 (0.99); RPB4 (0.986); CTK2 (0.978); SPT15 (0.977)
Homologues (species, bitscore): MNAT1 (Homo sapiens, 131.7); Mnat1 (Mus musculus, 129.0); mnat1 (Danio rerio, 130.2); mnat1 (Xenopus tropicalis, 126.3); Mat1 (Drosophila melanogaster, 137.9); mnat-1 (Caenorhabditis elegans, 90.9); AT4G30820 (Arabidopsis thaliana, 53.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1323716-1324681:+ | gene-YDR460W_AKU4011 | rna-NM_001180768.3_AKU4011 | cds-NP_010748.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:202075-203040:+ | gene-YDR460W_BG1 | rna-NM_001180768.3_BG1 | cds-NP_010748.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1355149-1356114:+ | gene-YDR460W_Bruggeman | rna-NM_001180768.3_Bruggeman | cds-NP_010748.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1332294-1333259:+ | gene-YDR460W_CAT1 | rna-NM_001180768.3_CAT1 | cds-NP_010748.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1318023-1318988:+ | gene-YDR460W_CBS1585 | rna-NM_001180768.3_CBS1585 | cds-NP_010748.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1337396-1338361:+ | gene-YDR460W_CBS436 | rna-NM_001180768.3_CBS436 | cds-NP_010748.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1313650-1314615:+ | gene-YDR460W_CBS6412 | rna-NM_001180768.3_CBS6412 | cds-NP_010748.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1336661-1337626:+ | gene-YDR460W_CBS6413 | rna-NM_001180768.3_CBS6413 | cds-NP_010748.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1382507-1383472:+ | gene-YDR460W_CENPK1137D | rna-NM_001180768.3_CENPK1137D | cds-NP_010748.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1327071-1328036:+ | gene-YDR460W_EthanolRed | rna-NM_001180768.3_EthanolRed | cds-NP_010748.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1330624-1331589:+ | gene-YDR460W_FaliES1 | rna-NM_001180768.3_FaliES1 | cds-NP_010748.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:28884-29849:+ | gene-YDR460W_JAY291 | rna-NM_001180768.3_JAY291 | cds-NP_010748.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1337639-1338604:+ | gene-YDR460W_MUCL30387 | rna-NM_001180768.3_MUCL30387 | cds-NP_010748.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1319663-1320628:+ | gene-YDR460W_MUCL30388 | rna-NM_001180768.3_MUCL30388 | cds-NP_010748.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1309507-1310472:+ | gene-YDR460W_MUCL39482 | rna-NM_001180768.3_MUCL39482 | cds-NP_010748.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1252306-1253271:+ | gene-YDR460W_MUCL42920 | rna-NM_001180768.3_MUCL42920 | cds-NP_010748.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1383734-1384699:+ | gene-YDR460W_NCIM3186 | rna-NM_001180768.3_NCIM3186 | cds-NP_010748.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1323278-1324243:+ | gene-YDR460W_NCYC1407 | rna-NM_001180768.3_NCYC1407 | cds-NP_010748.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1334133-1335098:+ | gene-YDR460W_PE2H3 | rna-NM_001180768.3_PE2H3 | cds-NP_010748.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1339690-1340655:+ | gene-YDR460W_PE2H4 | rna-NM_001180768.3_PE2H4 | cds-NP_010748.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1383811-1384776:+ | gene-YDR460W_S288C | rna-NM_001180768.3_S288C | cds-NP_010748.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:232388-233353:- | gene-YDR460W_SA1 | rna-NM_001180768.3_SA1 | cds-NP_010748.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1334846-1335811:+ | gene-YDR460W_ThermosaccDry | rna-NM_001180768.3_ThermosaccDry | cds-NP_010748.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1350580-1351545:+ | gene-YDR460W_VR1 | rna-NM_001180768.3_VR1 | cds-NP_010748.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:377520-378485:+ | gene-YDR460W_ZTW1 | rna-NM_001180768.3_ZTW1 | cds-NP_010748.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1337937-1338902:+ | gene-YDR460W_Sparadoxus | rna-NM_001180768.3_Sparadoxus | cds-NP_010748.3_Sparadoxus | 92.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |