Gene name: TFB2
Reference locus (S288C): YPL122C
Gene biotype: protein_coding
Description: Rna polymerase ii transcription factor b subunit 2; Subunit of TFIIH and nucleotide excision repair factor 3 complexes; involved in transcription initiation, required for nucleotide excision repair, similar to 52 kDa subunit of human TFIIH
Top 10 interactors (score): TFB4 (0.999); SSL2 (0.999); TFB5 (0.999); RAD3 (0.999); CCL1 (0.999); TFB1 (0.999); TFA1 (0.999); SSL1 (0.999); KIN28 (0.999); TFB3 (0.999); TFA2 (0.998); SUA7 (0.99); RPB10 (0.989); RAD14 (0.988); RPB7 (0.984); RPO21 (0.983); TFG1 (0.982); SPT15 (0.978); RPC10 (0.972); RPB9 (0.972)
Homologues (species, bitscore): GTF2H4 (Homo sapiens, 294.3); Gtf2h4 (Mus musculus, 295.8); gtf2h4 (Danio rerio, 325.5); gtf2h4 (Xenopus tropicalis, 242.7); mrn (Drosophila melanogaster, 285.8); Y73F8A.24 (Caenorhabditis elegans, 203.4); AT4G17020 (Arabidopsis thaliana, 211.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:296867-298408:- | gene-YPL122C_AKU4011 | rna-NM_001183936.1_AKU4011 | cds-NP_015203.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:502624-504165:- | gene-YPL122C_BG1 | rna-NM_001183936.1_BG1 | cds-NP_015203.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:322871-324412:- | gene-YPL122C_Bruggeman | rna-NM_001183936.1_Bruggeman | cds-NP_015203.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:319539-321080:- | gene-YPL122C_CAT1 | rna-NM_001183936.1_CAT1 | cds-NP_015203.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:300940-302481:- | gene-YPL122C_CBS1585 | rna-NM_001183936.1_CBS1585 | cds-NP_015203.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:315614-317155:- | gene-YPL122C_CBS436 | rna-NM_001183936.1_CBS436 | cds-NP_015203.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:305609-307150:- | gene-YPL122C_CBS6412 | rna-NM_001183936.1_CBS6412 | cds-NP_015203.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:297576-299117:- | gene-YPL122C_CBS6413 | rna-NM_001183936.1_CBS6413 | cds-NP_015203.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:319159-320700:- | gene-YPL122C_CENPK1137D | rna-NM_001183936.1_CENPK1137D | cds-NP_015203.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:295556-297097:- | gene-YPL122C_EthanolRed | rna-NM_001183936.1_EthanolRed | cds-NP_015203.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:303148-304689:- | gene-YPL122C_FaliES1 | rna-NM_001183936.1_FaliES1 | cds-NP_015203.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:61128-62669:+ | gene-YPL122C_JAY291 | rna-NM_001183936.1_JAY291 | cds-NP_015203.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:314110-315651:- | gene-YPL122C_MUCL30387 | rna-NM_001183936.1_MUCL30387 | cds-NP_015203.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:312131-313672:- | gene-YPL122C_MUCL30388 | rna-NM_001183936.1_MUCL30388 | cds-NP_015203.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:294269-295810:- | gene-YPL122C_MUCL39482 | rna-NM_001183936.1_MUCL39482 | cds-NP_015203.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:351512-353053:- | gene-YPL122C_MUCL42920 | rna-NM_001183936.1_MUCL42920 | cds-NP_015203.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:319209-320750:- | gene-YPL122C_NCIM3186 | rna-NM_001183936.1_NCIM3186 | cds-NP_015203.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:300722-302263:- | gene-YPL122C_NCYC1407 | rna-NM_001183936.1_NCYC1407 | cds-NP_015203.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:308213-309754:- | gene-YPL122C_PE2H3 | rna-NM_001183936.1_PE2H3 | cds-NP_015203.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:307836-309377:- | gene-YPL122C_PE2H4 | rna-NM_001183936.1_PE2H4 | cds-NP_015203.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:319226-320767:- | gene-YPL122C_S288C | rna-NM_001183936.1_S288C | cds-NP_015203.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:52913-54454:+ | gene-YPL122C_SA1 | rna-NM_001183936.1_SA1 | cds-NP_015203.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:302946-304487:- | gene-YPL122C_ThermosaccDry | rna-NM_001183936.1_ThermosaccDry | cds-NP_015203.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:317925-319466:- | gene-YPL122C_VR1 | rna-NM_001183936.1_VR1 | cds-NP_015203.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:302271-303812:- | gene-YPL122C_ZTW1 | rna-NM_001183936.1_ZTW1 | cds-NP_015203.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:304012-305553:- | gene-YPL122C_Sparadoxus | rna-NM_001183936.1_Sparadoxus | cds-NP_015203.1_Sparadoxus | 92.8 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |