Gene name: TFB1
Reference locus (S288C): YDR311W
Gene biotype: protein_coding
Description: Subunit of TFIIH and nucleotide excision repair factor 3 complexes; required for nucleotide excision repair, target for transcriptional activators; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): SSL1 (0.999); KIN28 (0.999); RAD2 (0.999); RAD4 (0.999); TFA1 (0.999); TFB3 (0.999); TFB5 (0.999); TFB2 (0.999); CCL1 (0.999); RAD3 (0.999); TFB4 (0.999); SSL2 (0.999); TFA2 (0.999); RPO21 (0.989); RAD14 (0.981); RAD23 (0.981); RAD34 (0.967); DST1 (0.965); TFG1 (0.948); RAD7 (0.943)
Homologues (species, bitscore): GTF2H1 (Homo sapiens, 76.3); Gtf2h1 (Mus musculus, 72.4); ENSDARP00000126350 (Danio rerio, 77.8); gtf2h1 (Xenopus tropicalis, 77.8); Tfb1 (Drosophila melanogaster, 73.9); R02D3.3 (Caenorhabditis elegans, 54.3); AT1G55750 (Arabidopsis thaliana, 70.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1037053-1038981:+ | gene-YDR311W_AKU4011 | rna-NM_001180619.3_AKU4011 | cds-NP_010597.3_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:92577-94505:- | gene-YDR311W_BG1 | rna-NM_001180619.3_BG1 | cds-NP_010597.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1064319-1066247:+ | gene-YDR311W_Bruggeman | rna-NM_001180619.3_Bruggeman | cds-NP_010597.3_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1051327-1053255:+ | gene-YDR311W_CAT1 | rna-NM_001180619.3_CAT1 | cds-NP_010597.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1031498-1033426:+ | gene-YDR311W_CBS1585 | rna-NM_001180619.3_CBS1585 | cds-NP_010597.3_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1049867-1051795:+ | gene-YDR311W_CBS436 | rna-NM_001180619.3_CBS436 | cds-NP_010597.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1028181-1030109:+ | gene-YDR311W_CBS6412 | rna-NM_001180619.3_CBS6412 | cds-NP_010597.3_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1049418-1051346:+ | gene-YDR311W_CBS6413 | rna-NM_001180619.3_CBS6413 | cds-NP_010597.3_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1083703-1085631:+ | gene-YDR311W_CENPK1137D | rna-NM_001180619.3_CENPK1137D | cds-NP_010597.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1035408-1037336:+ | gene-YDR311W_EthanolRed | rna-NM_001180619.3_EthanolRed | cds-NP_010597.3_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1043810-1045738:+ | gene-YDR311W_FaliES1 | rna-NM_001180619.3_FaliES1 | cds-NP_010597.3_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000130.1:61611-63539:+ | gene-YDR311W_JAY291 | rna-NM_001180619.3_JAY291 | cds-NP_010597.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1049830-1051758:+ | gene-YDR311W_MUCL30387 | rna-NM_001180619.3_MUCL30387 | cds-NP_010597.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1036905-1038833:+ | gene-YDR311W_MUCL30388 | rna-NM_001180619.3_MUCL30388 | cds-NP_010597.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1023305-1025233:+ | gene-YDR311W_MUCL39482 | rna-NM_001180619.3_MUCL39482 | cds-NP_010597.3_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:964449-966377:+ | gene-YDR311W_MUCL42920 | rna-NM_001180619.3_MUCL42920 | cds-NP_010597.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1084988-1086916:+ | gene-YDR311W_NCIM3186 | rna-NM_001180619.3_NCIM3186 | cds-NP_010597.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1036597-1038525:+ | gene-YDR311W_NCYC1407 | rna-NM_001180619.3_NCYC1407 | cds-NP_010597.3_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1047585-1049513:+ | gene-YDR311W_PE2H3 | rna-NM_001180619.3_PE2H3 | cds-NP_010597.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1053170-1055098:+ | gene-YDR311W_PE2H4 | rna-NM_001180619.3_PE2H4 | cds-NP_010597.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1085065-1086993:+ | gene-YDR311W_S288C | rna-NM_001180619.3_S288C | cds-NP_010597.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000025.1:61811-63739:+ | gene-YDR311W_SA1 | rna-NM_001180619.3_SA1 | cds-NP_010597.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1048083-1050011:+ | gene-YDR311W_ThermosaccDry | rna-NM_001180619.3_ThermosaccDry | cds-NP_010597.3_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1064002-1065930:+ | gene-YDR311W_VR1 | rna-NM_001180619.3_VR1 | cds-NP_010597.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:92199-94127:+ | gene-YDR311W_ZTW1 | rna-NM_001180619.3_ZTW1 | cds-NP_010597.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1043607-1045535:+ | gene-YDR311W_Sparadoxus | rna-NM_001180619.3_Sparadoxus | cds-NP_010597.3_Sparadoxus | 90.6 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |