Gene name: TFA2
Reference locus (S288C): YKR062W
Gene biotype: protein_coding
Description: TFIIE small subunit; involved in RNA polymerase II transcription initiation; Belongs to the TFIIE beta subunit family
Top 10 interactors (score): CCL1 (0.999); TFB1 (0.999); SSL2 (0.999); TFG1 (0.999); RPO21 (0.999); TFG2 (0.999); TFA1 (0.999); TFB3 (0.999); KIN28 (0.999); SSL1 (0.999); SUA7 (0.999); RPB2 (0.998); RPO26 (0.998); TFB5 (0.998); RPB5 (0.998); RAD3 (0.998); RPC10 (0.998); TFB2 (0.998); SPT15 (0.996); TOA2 (0.995)
Homologues (species, bitscore): GTF2E2 (Homo sapiens, 53.1); Gtf2e2 (Mus musculus, 54.7); gtf2e2 (Danio rerio, 56.2); AT4G20330 (Arabidopsis thaliana, 61.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:545707-546693:+ | gene-YKR062W_AKU4011 | rna-NM_001179852.1_AKU4011 | cds-NP_012988.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:97580-98566:- | gene-YKR062W_BG1 | rna-NM_001179852.1_BG1 | cds-NP_012988.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:567135-568121:+ | gene-YKR062W_Bruggeman | rna-NM_001179852.1_Bruggeman | cds-NP_012988.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:563559-564545:+ | gene-YKR062W_CAT1 | rna-NM_001179852.1_CAT1 | cds-NP_012988.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:558198-559184:+ | gene-YKR062W_CBS1585 | rna-NM_001179852.1_CBS1585 | cds-NP_012988.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:556532-557518:+ | gene-YKR062W_CBS436 | rna-NM_001179852.1_CBS436 | cds-NP_012988.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:541488-542474:+ | gene-YKR062W_CBS6412 | rna-NM_001179852.1_CBS6412 | cds-NP_012988.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:558018-559004:+ | gene-YKR062W_CBS6413 | rna-NM_001179852.1_CBS6413 | cds-NP_012988.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:559320-560306:+ | gene-YKR062W_CENPK1137D | rna-NM_001179852.1_CENPK1137D | cds-NP_012988.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:555016-556002:+ | gene-YKR062W_EthanolRed | rna-NM_001179852.1_EthanolRed | cds-NP_012988.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:558916-559902:+ | gene-YKR062W_FaliES1 | rna-NM_001179852.1_FaliES1 | cds-NP_012988.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000410.1:18331-19317:- | gene-YKR062W_JAY291 | rna-NM_001179852.1_JAY291 | cds-NP_012988.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:567534-568520:+ | gene-YKR062W_MUCL30387 | rna-NM_001179852.1_MUCL30387 | cds-NP_012988.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:562146-563132:+ | gene-YKR062W_MUCL30388 | rna-NM_001179852.1_MUCL30388 | cds-NP_012988.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:557027-558013:+ | gene-YKR062W_MUCL39482 | rna-NM_001179852.1_MUCL39482 | cds-NP_012988.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:563049-564035:+ | gene-YKR062W_MUCL42920 | rna-NM_001179852.1_MUCL42920 | cds-NP_012988.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:559655-560641:+ | gene-YKR062W_NCIM3186 | rna-NM_001179852.1_NCIM3186 | cds-NP_012988.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:557450-558436:+ | gene-YKR062W_NCYC1407 | rna-NM_001179852.1_NCYC1407 | cds-NP_012988.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:582609-583595:+ | gene-YKR062W_PE2H3 | rna-NM_001179852.1_PE2H3 | cds-NP_012988.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:567004-567990:+ | gene-YKR062W_PE2H4 | rna-NM_001179852.1_PE2H4 | cds-NP_012988.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:559666-560652:+ | gene-YKR062W_S288C | rna-NM_001179852.1_S288C | cds-NP_012988.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000029.1:121191-122177:- | gene-YKR062W_SA1 | rna-NM_001179852.1_SA1 | cds-NP_012988.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:558155-559141:+ | gene-YKR062W_ThermosaccDry | rna-NM_001179852.1_ThermosaccDry | cds-NP_012988.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:557925-558911:+ | gene-YKR062W_VR1 | rna-NM_001179852.1_VR1 | cds-NP_012988.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:555643-556629:+ | gene-YKR062W_ZTW1 | rna-NM_001179852.1_ZTW1 | cds-NP_012988.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:581046-582032:+ | gene-YKR062W_Sparadoxus | rna-NM_001179852.1_Sparadoxus | cds-NP_012988.1_Sparadoxus | 91.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |