Gene name: TFA1
Reference locus (S288C): YKL028W
Gene biotype: protein_coding
Description: Transcription initiation factor IIE subunit alpha; TFIIE large subunit; involved in recruitment of RNA polymerase II to the promoter, activation of TFIIH, and promoter opening
Top 10 interactors (score): RAD3 (0.999); TFG1 (0.999); KIN28 (0.999); SSL2 (0.999); TFB5 (0.999); RPO21 (0.999); TFB2 (0.999); TFA2 (0.999); CCL1 (0.999); TFB1 (0.999); SUA7 (0.999); TFG2 (0.999); TOA1 (0.999); SSL1 (0.999); SPT15 (0.998); RPC10 (0.998); RPB9 (0.998); RPB5 (0.998); TFB3 (0.997); TOA2 (0.996)
Homologues (species, bitscore): GTF2E1 (Homo sapiens, 116.7); Gtf2e1 (Mus musculus, 115.2); gtf2e1 (Danio rerio, 108.2); gtf2e1.2 (Xenopus tropicalis, 119.4); TfIIEalpha (Drosophila melanogaster, 107.8); ZK550.4 (Caenorhabditis elegans, 73.6); AT1G03280 (Arabidopsis thaliana, 72.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:371770-373224:+ | gene-YKL028W_AKU4011 | rna-NM_001179594.3_AKU4011 | cds-NP_012897.3_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:270871-272289:- | gene-YKL028W_BG1 | rna-NM_001179594.3_BG1 | cds-NP_012897.3_BG1 | 97.1 | 97.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:393463-394920:+ | gene-YKL028W_Bruggeman | rna-NM_001179594.3_Bruggeman | cds-NP_012897.3_Bruggeman | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:388402-389847:+ | gene-YKL028W_CAT1 | rna-NM_001179594.3_CAT1 | cds-NP_012897.3_CAT1 | 99.2 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:384495-385943:+ | gene-YKL028W_CBS1585 | rna-NM_001179594.3_CBS1585 | cds-NP_012897.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:383174-384601:+ | gene-YKL028W_CBS436 | rna-NM_001179594.3_CBS436 | cds-NP_012897.3_CBS436 | 97.5 | 98.5 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:368651-370099:+ | gene-YKL028W_CBS6412 | rna-NM_001179594.3_CBS6412 | cds-NP_012897.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:384350-385798:+ | gene-YKL028W_CBS6413 | rna-NM_001179594.3_CBS6413 | cds-NP_012897.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:385435-386883:+ | gene-YKL028W_CENPK1137D | rna-NM_001179594.3_CENPK1137D | cds-NP_012897.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:382266-383720:+ | gene-YKL028W_EthanolRed | rna-NM_001179594.3_EthanolRed | cds-NP_012897.3_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:384358-385809:+ | gene-YKL028W_FaliES1 | rna-NM_001179594.3_FaliES1 | cds-NP_012897.3_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000142.1:45426-46847:- | gene-YKL028W_JAY291 | rna-NM_001179594.3_JAY291 | cds-NP_012897.3_JAY291 | 97.3 | 98.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:392539-393984:+ | gene-YKL028W_MUCL30387 | rna-NM_001179594.3_MUCL30387 | cds-NP_012897.3_MUCL30387 | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:1008432-1009880:+ | gene-YKL028W_MUCL30388 | rna-NM_001179594.3_MUCL30388 | cds-NP_012897.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:383812-385260:+ | gene-YKL028W_MUCL39482 | rna-NM_001179594.3_MUCL39482 | cds-NP_012897.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:389213-390649:+ | gene-YKL028W_MUCL42920 | rna-NM_001179594.3_MUCL42920 | cds-NP_012897.3_MUCL42920 | 97.2 | 98.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:385747-387195:+ | gene-YKL028W_NCIM3186 | rna-NM_001179594.3_NCIM3186 | cds-NP_012897.3_NCIM3186 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:384004-385452:+ | gene-YKL028W_NCYC1407 | rna-NM_001179594.3_NCYC1407 | cds-NP_012897.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:408534-409952:+ | gene-YKL028W_PE2H3 | rna-NM_001179594.3_PE2H3 | cds-NP_012897.3_PE2H3 | 97.1 | 97.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:393257-394699:+ | gene-YKL028W_PE2H4 | rna-NM_001179594.3_PE2H4 | cds-NP_012897.3_PE2H4 | 96.7 | 98.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:385758-387206:+ | gene-YKL028W_S288C | rna-NM_001179594.3_S288C | cds-NP_012897.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000027.1:64037-65485:+ | gene-YKL028W_SA1 | rna-NM_001179594.3_SA1 | cds-NP_012897.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:384454-385908:+ | gene-YKL028W_ThermosaccDry | rna-NM_001179594.3_ThermosaccDry | cds-NP_012897.3_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:383536-384978:+ | gene-YKL028W_VR1 | rna-NM_001179594.3_VR1 | cds-NP_012897.3_VR1 | 96.7 | 98.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:382485-383936:+ | gene-YKL028W_ZTW1 | rna-NM_001179594.3_ZTW1 | cds-NP_012897.3_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:401314-402738:+ | gene-YKL028W_Sparadoxus | rna-NM_001179594.3_Sparadoxus | cds-NP_012897.3_Sparadoxus | 89.9 | 98.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |