Gene name: TEX1
Reference locus (S288C): YNL253W
Gene biotype: protein_coding
Description: Tho complex subunit 3; Protein involved in mRNA export; component of the transcription export (TREX) complex
Top 10 interactors (score): THO2 (0.996); THP2 (0.993); MFT1 (0.992); HPR1 (0.986); SUB2 (0.967); YRA1 (0.924); PHM7 (0.813); CDC73 (0.77); MNT2 (0.75); ATG34 (0.711); GPG1 (0.698); CTR9 (0.677); PRP22 (0.659); CYC7 (0.619); HRB1 (0.619); CYC1 (0.619); PAF1 (0.613); LEO1 (0.611); SPO11 (0.579); EST2 (0.545)
Homologues (species, bitscore): THOC3 (Homo sapiens, 63.5); Thoc3 (Mus musculus, 67.4); thoc3 (Danio rerio, 67.4); thoc3 (Xenopus tropicalis, 56.6); tex (Drosophila melanogaster, 57.4); thoc-3 (Caenorhabditis elegans, 57.0); TEX1 (Arabidopsis thaliana, 62.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:163789-165057:+ | gene-YNL253W_AKU4011 | rna-NM_001183091.1_AKU4011 | cds-NP_014146.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:67746-69014:+ | gene-YNL253W_BG1 | rna-NM_001183091.1_BG1 | cds-NP_014146.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:173611-174879:+ | gene-YNL253W_Bruggeman | rna-NM_001183091.1_Bruggeman | cds-NP_014146.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:180906-182174:+ | gene-YNL253W_CAT1 | rna-NM_001183091.1_CAT1 | cds-NP_014146.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:164189-165457:+ | gene-YNL253W_CBS1585 | rna-NM_001183091.1_CBS1585 | cds-NP_014146.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:159290-160558:+ | gene-YNL253W_CBS436 | rna-NM_001183091.1_CBS436 | cds-NP_014146.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:160600-161868:+ | gene-YNL253W_CBS6412 | rna-NM_001183091.1_CBS6412 | cds-NP_014146.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:160881-162149:+ | gene-YNL253W_CBS6413 | rna-NM_001183091.1_CBS6413 | cds-NP_014146.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:163832-165100:+ | gene-YNL253W_CENPK1137D | rna-NM_001183091.1_CENPK1137D | cds-NP_014146.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:161439-162707:+ | gene-YNL253W_EthanolRed | rna-NM_001183091.1_EthanolRed | cds-NP_014146.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:156174-157442:+ | gene-YNL253W_FaliES1 | rna-NM_001183091.1_FaliES1 | cds-NP_014146.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000082.1:67341-68609:+ | gene-YNL253W_JAY291 | rna-NM_001183091.1_JAY291 | cds-NP_014146.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:169395-170663:+ | gene-YNL253W_MUCL30387 | rna-NM_001183091.1_MUCL30387 | cds-NP_014146.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:167979-169247:+ | gene-YNL253W_MUCL30388 | rna-NM_001183091.1_MUCL30388 | cds-NP_014146.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:161679-162947:+ | gene-YNL253W_MUCL39482 | rna-NM_001183091.1_MUCL39482 | cds-NP_014146.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:163946-165214:+ | gene-YNL253W_MUCL42920 | rna-NM_001183091.1_MUCL42920 | cds-NP_014146.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:169987-171255:+ | gene-YNL253W_NCIM3186 | rna-NM_001183091.1_NCIM3186 | cds-NP_014146.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:163783-165051:+ | gene-YNL253W_NCYC1407 | rna-NM_001183091.1_NCYC1407 | cds-NP_014146.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:160684-161952:+ | gene-YNL253W_PE2H3 | rna-NM_001183091.1_PE2H3 | cds-NP_014146.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:160072-161340:+ | gene-YNL253W_PE2H4 | rna-NM_001183091.1_PE2H4 | cds-NP_014146.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:170018-171286:+ | gene-YNL253W_S288C | rna-NM_001183091.1_S288C | cds-NP_014146.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000040.1:81004-82272:- | gene-YNL253W_SA1 | rna-NM_001183091.1_SA1 | cds-NP_014146.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:157030-158298:+ | gene-YNL253W_ThermosaccDry | rna-NM_001183091.1_ThermosaccDry | cds-NP_014146.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:175941-177209:+ | gene-YNL253W_VR1 | rna-NM_001183091.1_VR1 | cds-NP_014146.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:67362-68630:+ | gene-YNL253W_ZTW1 | rna-NM_001183091.1_ZTW1 | cds-NP_014146.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:167282-168565:+ | gene-YNL253W_Sparadoxus | rna-NM_001183091.1_Sparadoxus | cds-NP_014146.1_Sparadoxus | 88.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |