Gene name: TEF1
Reference locus (S288C): YPR080W
Gene biotype: protein_coding
Description: Translational elongation factor EF-1 alpha; in the GTP-bound active form, binds to and delivers aminoacylated tRNA to the A-site of ribosomes for elongation of nascent polypeptides; associates with vacuolar Rho1p GTPase; may also have a role in tRNA re-export from the nucleus; TEF1 has a paralog, TEF2, that arose from the whole genome duplication
Top 10 interactors (score): EFB1 (0.999); CAM1 (0.999); TEF4 (0.999); ACT1 (0.999); RPS2 (0.997); TDH3 (0.993); TEF2 (0.992); RPL4A (0.992); YEF3 (0.992); RPL5 (0.992); TDH2 (0.992); RPL3 (0.99); ASC1 (0.99); PGK1 (0.989); RPP0 (0.987); RPS3 (0.986); EFT1 (0.985); RPS5 (0.983); TIF2 (0.982); EFM4 (0.975)
Homologues (species, bitscore): EEF1A1 (Homo sapiens, 771.5); Eef1a1 (Mus musculus, 772.3); eef1a1l1 (Danio rerio, 777.3); eef1a1o (Xenopus tropicalis, 770.8); F1 (Drosophila melanogaster, 750.7); eef-1A.1 (Caenorhabditis elegans, 754.2); A1 (Arabidopsis thaliana, 696.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:224028-225404:- | gene-YPR080W_BG1 | rna-NM_001184177.1_BG1 | cds-NP_015405.1_BG1 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:794256-795632:+ | gene-YPR080W_CAT1 | rna-NM_001184177.1_CAT1 | cds-NP_015405.1_CAT1 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:675953-677308:+ | gene-YPR080W_CBS1585 | rna-NM_001184177.1_CBS1585 | cds-NP_015405.1_CBS1585 | 96.8 | 98.4 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:690578-691954:+ | gene-YPR080W_CBS436 | rna-NM_001184177.1_CBS436 | cds-NP_015405.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | MBVQ01000056.1:1-1163:- | gene-YPR080W_CBS6412 | rna-NM_001184177.1_CBS6412 | cds-NP_015405.1_CBS6412 | 84.3 | 84.4 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | MBWB01000031.1:1-1316:- | gene-YPR080W_EthanolRed | rna-NM_001184177.1_EthanolRed | cds-NP_015405.1_EthanolRed | 95.4 | 95.5 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000094.1:1-1377:+ | gene-YPR080W_JAY291 | rna-NM_001184177.1_JAY291 | cds-NP_015405.1_JAY291 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:700577-701953:+ | gene-YPR080W_NCIM3186 | rna-NM_001184177.1_NCIM3186 | cds-NP_015405.1_NCIM3186 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:677386-678741:+ | gene-YPR080W_NCYC1407 | rna-NM_001184177.1_NCYC1407 | cds-NP_015405.1_NCYC1407 | 96.8 | 98.4 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:684037-685413:+ | gene-YPR080W_PE2H3 | rna-NM_001184177.1_PE2H3 | cds-NP_015405.1_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:683685-685061:+ | gene-YPR080W_PE2H4 | rna-NM_001184177.1_PE2H4 | cds-NP_015405.1_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:700594-701970:+ | gene-YPR080W_S288C | rna-NM_001184177.1_S288C | cds-NP_015405.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000203.1:1-1377:+ | gene-YPR080W_SA1 | rna-NM_001184177.1_SA1 | cds-NP_015405.1_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:694276-695652:+ | gene-YPR080W_VR1 | rna-NM_001184177.1_VR1 | cds-NP_015405.1_VR1 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:677103-678479:+ | gene-YPR080W_ZTW1 | rna-NM_001184177.1_ZTW1 | cds-NP_015405.1_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:677798-679174:+ | gene-YPR080W_Sparadoxus | rna-NM_001184177.1_Sparadoxus | cds-NP_015405.1_Sparadoxus | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |