Gene name: TDA9
Reference locus (S288C): YML081W
Gene biotype: protein_coding
Description: Transcription factor that regulates acetate production; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; null mutant is sensitive to expression of the top1-T722A allele; not an essential gene; TDA9 has a paralog, RSF2, that arose from the whole genome duplication; Belongs to the RSF2/TDA9 family
Top 10 interactors (score): ALD6 (0.761); FAF1 (0.748); STP3 (0.744); API2 (0.715); YOL019W (0.67); ALD4 (0.658); CMR3 (0.65); ABF1 (0.611); YPL062W (0.597); GCN5 (0.587); ALD3 (0.579); HIR3 (0.574); HOG1 (0.574); YPR015C (0.568); ISW1 (0.557); SKG6 (0.529); DOT6 (0.526); NHP10 (0.523); ALD2 (0.51); NSI1 (0.5)
Homologues (species, bitscore): EGR3 (Homo sapiens, 70.5); Egr3 (Mus musculus, 70.9); egr2b (Danio rerio, 70.5); egr1 (Xenopus tropicalis, 70.1); sr (Drosophila melanogaster, 69.3); egrh-1 (Caenorhabditis elegans, 68.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:98499-102254:+ | gene-YML081W_AKU4011 | rna-NM_001182440.1_AKU4011 | cds-NP_013630.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:373859-377614:- | gene-YML081W_BG1 | rna-NM_001182440.1_BG1 | cds-NP_013630.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:104667-108422:+ | gene-YML081W_Bruggeman | rna-NM_001182440.1_Bruggeman | cds-NP_013630.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:106344-110099:+ | gene-YML081W_CAT1 | rna-NM_001182440.1_CAT1 | cds-NP_013630.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:98506-102261:+ | gene-YML081W_CBS1585 | rna-NM_001182440.1_CBS1585 | cds-NP_013630.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:104435-108190:+ | gene-YML081W_CBS436 | rna-NM_001182440.1_CBS436 | cds-NP_013630.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:99216-102971:+ | gene-YML081W_CBS6412 | rna-NM_001182440.1_CBS6412 | cds-NP_013630.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:97689-101444:+ | gene-YML081W_CBS6413 | rna-NM_001182440.1_CBS6413 | cds-NP_013630.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:99484-103239:+ | gene-YML081W_CENPK1137D | rna-NM_001182440.1_CENPK1137D | cds-NP_013630.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:98775-102530:+ | gene-YML081W_EthanolRed | rna-NM_001182440.1_EthanolRed | cds-NP_013630.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:99284-103039:+ | gene-YML081W_FaliES1 | rna-NM_001182440.1_FaliES1 | cds-NP_013630.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000366.1:54050-57805:- | gene-YML081W_JAY291 | rna-NM_001182440.1_JAY291 | cds-NP_013630.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:103191-106946:+ | gene-YML081W_MUCL30387 | rna-NM_001182440.1_MUCL30387 | cds-NP_013630.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:106337-110092:+ | gene-YML081W_MUCL30388 | rna-NM_001182440.1_MUCL30388 | cds-NP_013630.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:98517-102272:+ | gene-YML081W_MUCL39482 | rna-NM_001182440.1_MUCL39482 | cds-NP_013630.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:103248-107003:+ | gene-YML081W_MUCL42920 | rna-NM_001182440.1_MUCL42920 | cds-NP_013630.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:104731-108486:+ | gene-YML081W_NCIM3186 | rna-NM_001182440.1_NCIM3186 | cds-NP_013630.1_NCIM3186 | 92.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:99314-103069:+ | gene-YML081W_NCYC1407 | rna-NM_001182440.1_NCYC1407 | cds-NP_013630.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:104674-108429:+ | gene-YML081W_PE2H3 | rna-NM_001182440.1_PE2H3 | cds-NP_013630.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:104612-108367:+ | gene-YML081W_PE2H4 | rna-NM_001182440.1_PE2H4 | cds-NP_013630.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:104777-108532:+ | gene-YML081W_S288C | rna-NM_001182440.1_S288C | cds-NP_013630.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000041.1:75717-79472:- | gene-YML081W_SA1 | rna-NM_001182440.1_SA1 | cds-NP_013630.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:98576-102331:+ | gene-YML081W_ThermosaccDry | rna-NM_001182440.1_ThermosaccDry | cds-NP_013630.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:102963-106718:+ | gene-YML081W_VR1 | rna-NM_001182440.1_VR1 | cds-NP_013630.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:78109-81864:+ | gene-YML081W_ZTW1 | rna-NM_001182440.1_ZTW1 | cds-NP_013630.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:109287-113039:+ | gene-YML081W_Sparadoxus | rna-NM_001182440.1_Sparadoxus | cds-NP_013630.1_Sparadoxus | 88.5 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |