Gene name: TDA7
Reference locus (S288C): YNL176C
Gene biotype: protein_coding
Description: Topoisomerase I damage affected protein 7; Cell cycle-regulated gene of unknown function; promoter bound by Fkh2p; null mutant is sensitive to expression of the top1-T722A allele; TDA7 has a paralog, YDL211C, that arose from the whole genome duplication
Top 10 interactors (score): YML053C (0.746); YBR138C (0.711); QRI1 (0.71); IRC8 (0.691); TEL2 (0.651); ERS1 (0.65); RFC4 (0.617); EGO2 (0.611); ADD37 (0.574); YPI1 (0.572); ZIM17 (0.571); DIN7 (0.569); ALG5 (0.569); SPC24 (0.529); JSN1 (0.516); PPN1 (0.499); SCO1 (0.499); DSE1 (0.497); HOS3 (0.485); NEW1 (0.483)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:298807-300705:- | gene-YNL176C_AKU4011 | rna-NM_001183014.2_AKU4011 | cds-NP_014223.2_AKU4011 | 98.2 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:202765-204675:- | gene-YNL176C_BG1 | rna-NM_001183014.2_BG1 | cds-NP_014223.2_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:308855-310765:- | gene-YNL176C_Bruggeman | rna-NM_001183014.2_Bruggeman | cds-NP_014223.2_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:351147-353056:- | gene-YNL176C_CAT1 | rna-NM_001183014.2_CAT1 | cds-NP_014223.2_CAT1 | 91.0 | 97.1 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:299460-301358:- | gene-YNL176C_CBS1585 | rna-NM_001183014.2_CBS1585 | cds-NP_014223.2_CBS1585 | 98.0 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:367771-369681:- | gene-YNL176C_CBS436 | rna-NM_001183014.2_CBS436 | cds-NP_014223.2_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:294864-296762:- | gene-YNL176C_CBS6412 | rna-NM_001183014.2_CBS6412 | cds-NP_014223.2_CBS6412 | 98.2 | 99.3 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:295893-297791:- | gene-YNL176C_CBS6413 | rna-NM_001183014.2_CBS6413 | cds-NP_014223.2_CBS6413 | 98.0 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:298889-300799:- | gene-YNL176C_CENPK1137D | rna-NM_001183014.2_CENPK1137D | cds-NP_014223.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:295780-297678:- | gene-YNL176C_EthanolRed | rna-NM_001183014.2_EthanolRed | cds-NP_014223.2_EthanolRed | 98.1 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:291693-293591:- | gene-YNL176C_FaliES1 | rna-NM_001183014.2_FaliES1 | cds-NP_014223.2_FaliES1 | 98.1 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000260.1:24904-26814:+ | gene-YNL176C_JAY291 | rna-NM_001183014.2_JAY291 | cds-NP_014223.2_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:304671-306581:- | gene-YNL176C_MUCL30387 | rna-NM_001183014.2_MUCL30387 | cds-NP_014223.2_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:338976-341135:- | gene-YNL176C_MUCL30388 | rna-NM_001183014.2_MUCL30388 | cds-NP_014223.2_MUCL30388 | 88.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:296699-298597:- | gene-YNL176C_MUCL39482 | rna-NM_001183014.2_MUCL39482 | cds-NP_014223.2_MUCL39482 | 98.0 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:299091-301001:- | gene-YNL176C_MUCL42920 | rna-NM_001183014.2_MUCL42920 | cds-NP_014223.2_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:305039-306949:- | gene-YNL176C_NCIM3186 | rna-NM_001183014.2_NCIM3186 | cds-NP_014223.2_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:298793-300691:- | gene-YNL176C_NCYC1407 | rna-NM_001183014.2_NCYC1407 | cds-NP_014223.2_NCYC1407 | 98.0 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:295744-297654:- | gene-YNL176C_PE2H3 | rna-NM_001183014.2_PE2H3 | cds-NP_014223.2_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:295132-297042:- | gene-YNL176C_PE2H4 | rna-NM_001183014.2_PE2H4 | cds-NP_014223.2_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:305070-306980:- | gene-YNL176C_S288C | rna-NM_001183014.2_S288C | cds-NP_014223.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000018.1:106593-108503:+ | gene-YNL176C_SA1 | rna-NM_001183014.2_SA1 | cds-NP_014223.2_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:292550-294448:- | gene-YNL176C_ThermosaccDry | rna-NM_001183014.2_ThermosaccDry | cds-NP_014223.2_ThermosaccDry | 98.1 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:311065-312975:- | gene-YNL176C_VR1 | rna-NM_001183014.2_VR1 | cds-NP_014223.2_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:202374-204275:- | gene-YNL176C_ZTW1 | rna-NM_001183014.2_ZTW1 | cds-NP_014223.2_ZTW1 | 98.5 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:303116-305050:- | gene-YNL176C_Sparadoxus | rna-NM_001183014.2_Sparadoxus | cds-NP_014223.2_Sparadoxus | 82.7 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |