Gene name: TDA3
Reference locus (S288C): YHR009C
Gene biotype: protein_coding
Description: Putative oxidoreductase involved in late endosome to Golgi transport; physical and genetical interactions with Btn2p; null mutant is viable, has extended S phase, and sensitive to expression of top1-T722A allele; similar to human FOXRED1
Top 10 interactors (score): YGR016W (0.915); AIF1 (0.912); YMR085W (0.805); TDA1 (0.765); RTK1 (0.763); CMR2 (0.75); YGR127W (0.75); GCG1 (0.749); GCV1 (0.739); YER152C (0.731); YOR012W (0.711); YGR111W (0.711); AIM2 (0.71); YML082W (0.702); YIL165C (0.691); VTS1 (0.669); PUF3 (0.669); BTN2 (0.633); UGA1 (0.621); CWH41 (0.62)
Homologues (species, bitscore): AT5G67290 (Arabidopsis thaliana, 152.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:112398-113969:- | gene-YHR009C_AKU4011 | rna-NM_001179139.1_AKU4011 | cds-NP_011873.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:32108-33679:- | gene-YHR009C_BG1 | rna-NM_001179139.1_BG1 | cds-NP_011873.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:119236-120807:- | gene-YHR009C_Bruggeman | rna-NM_001179139.1_Bruggeman | cds-NP_011873.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:113473-115044:- | gene-YHR009C_CAT1 | rna-NM_001179139.1_CAT1 | cds-NP_011873.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:112983-114554:- | gene-YHR009C_CBS1585 | rna-NM_001179139.1_CBS1585 | cds-NP_011873.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:105802-107373:- | gene-YHR009C_CBS436 | rna-NM_001179139.1_CBS436 | cds-NP_011873.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:112580-114151:- | gene-YHR009C_CBS6412 | rna-NM_001179139.1_CBS6412 | cds-NP_011873.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:112317-113888:- | gene-YHR009C_CBS6413 | rna-NM_001179139.1_CBS6413 | cds-NP_011873.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:117269-118840:- | gene-YHR009C_CENPK1137D | rna-NM_001179139.1_CENPK1137D | cds-NP_011873.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:112200-113771:- | gene-YHR009C_EthanolRed | rna-NM_001179139.1_EthanolRed | cds-NP_011873.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:113172-114743:- | gene-YHR009C_FaliES1 | rna-NM_001179139.1_FaliES1 | cds-NP_011873.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000064.1:7475-9046:+ | gene-YHR009C_JAY291 | rna-NM_001179139.1_JAY291 | cds-NP_011873.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:116748-118319:- | gene-YHR009C_MUCL30387 | rna-NM_001179139.1_MUCL30387 | cds-NP_011873.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:118660-120231:- | gene-YHR009C_MUCL30388 | rna-NM_001179139.1_MUCL30388 | cds-NP_011873.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:112010-113581:- | gene-YHR009C_MUCL39482 | rna-NM_001179139.1_MUCL39482 | cds-NP_011873.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:116825-118396:- | gene-YHR009C_MUCL42920 | rna-NM_001179139.1_MUCL42920 | cds-NP_011873.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:123991-125562:- | gene-YHR009C_NCIM3186 | rna-NM_001179139.1_NCIM3186 | cds-NP_011873.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:111425-112996:- | gene-YHR009C_NCYC1407 | rna-NM_001179139.1_NCYC1407 | cds-NP_011873.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:113627-115198:- | gene-YHR009C_PE2H3 | rna-NM_001179139.1_PE2H3 | cds-NP_011873.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:121068-122639:- | gene-YHR009C_PE2H4 | rna-NM_001179139.1_PE2H4 | cds-NP_011873.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:124109-125680:- | gene-YHR009C_S288C | rna-NM_001179139.1_S288C | cds-NP_011873.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000075.1:21186-22757:+ | gene-YHR009C_SA1 | rna-NM_001179139.1_SA1 | cds-NP_011873.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:114267-115838:- | gene-YHR009C_ThermosaccDry | rna-NM_001179139.1_ThermosaccDry | cds-NP_011873.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:119786-121357:- | gene-YHR009C_VR1 | rna-NM_001179139.1_VR1 | cds-NP_011873.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:105509-107080:- | gene-YHR009C_ZTW1 | rna-NM_001179139.1_ZTW1 | cds-NP_011873.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:111901-113472:- | gene-YHR009C_Sparadoxus | rna-NM_001179139.1_Sparadoxus | cds-NP_011873.1_Sparadoxus | 91.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |