Gene name: TDA2
Reference locus (S288C): YER071C
Gene biotype: protein_coding
Description: Topoisomerase I damage affected protein 2; Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; null mutant is sensitive to expression of the top1-T722A allele
Top 10 interactors (score): AIM21 (0.973); CAP2 (0.792); CAP1 (0.775); PAL1 (0.747); HRT3 (0.745); YCR043C (0.716); FAP1 (0.714); BIL1 (0.712); YMR295C (0.651); ABP1 (0.526); GUK1 (0.499); DYN2 (0.491); PAC11 (0.483); HAT1 (0.452); DYN1 (0.444); KAR9 (0.429)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:295729-296109:- | gene-YER071C_AKU4011 | rna-NM_001178962.3_AKU4011 | cds-NP_010994.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:129674-130054:+ | gene-YER071C_BG1 | rna-NM_001178962.3_BG1 | cds-NP_010994.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:305323-305703:- | gene-YER071C_Bruggeman | rna-NM_001178962.3_Bruggeman | cds-NP_010994.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:299175-299555:- | gene-YER071C_CAT1 | rna-NM_001178962.3_CAT1 | cds-NP_010994.3_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:295580-295960:- | gene-YER071C_CBS1585 | rna-NM_001178962.3_CBS1585 | cds-NP_010994.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:297732-298112:- | gene-YER071C_CBS436 | rna-NM_001178962.3_CBS436 | cds-NP_010994.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:295050-295430:- | gene-YER071C_CBS6412 | rna-NM_001178962.3_CBS6412 | cds-NP_010994.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:301061-301441:- | gene-YER071C_CBS6413 | rna-NM_001178962.3_CBS6413 | cds-NP_010994.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:299775-300155:- | gene-YER071C_CENPK1137D | rna-NM_001178962.3_CENPK1137D | cds-NP_010994.3_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:296066-296446:- | gene-YER071C_EthanolRed | rna-NM_001178962.3_EthanolRed | cds-NP_010994.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:296518-296898:- | gene-YER071C_FaliES1 | rna-NM_001178962.3_FaliES1 | cds-NP_010994.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000153.1:11578-11958:- | gene-YER071C_JAY291 | rna-NM_001178962.3_JAY291 | cds-NP_010994.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:300721-301101:- | gene-YER071C_MUCL30387 | rna-NM_001178962.3_MUCL30387 | cds-NP_010994.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:296391-296771:- | gene-YER071C_MUCL30388 | rna-NM_001178962.3_MUCL30388 | cds-NP_010994.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:294615-294995:- | gene-YER071C_MUCL39482 | rna-NM_001178962.3_MUCL39482 | cds-NP_010994.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:301856-302236:- | gene-YER071C_MUCL42920 | rna-NM_001178962.3_MUCL42920 | cds-NP_010994.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:301946-302326:- | gene-YER071C_NCIM3186 | rna-NM_001178962.3_NCIM3186 | cds-NP_010994.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:299682-300062:- | gene-YER071C_NCYC1407 | rna-NM_001178962.3_NCYC1407 | cds-NP_010994.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:310328-310708:- | gene-YER071C_PE2H3 | rna-NM_001178962.3_PE2H3 | cds-NP_010994.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:300269-300649:- | gene-YER071C_PE2H4 | rna-NM_001178962.3_PE2H4 | cds-NP_010994.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:301947-302327:- | gene-YER071C_S288C | rna-NM_001178962.3_S288C | cds-NP_010994.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:11589-11969:- | gene-YER071C_SA1 | rna-NM_001178962.3_SA1 | cds-NP_010994.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:297314-297694:- | gene-YER071C_ThermosaccDry | rna-NM_001178962.3_ThermosaccDry | cds-NP_010994.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:298012-298392:- | gene-YER071C_VR1 | rna-NM_001178962.3_VR1 | cds-NP_010994.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:294482-294862:- | gene-YER071C_ZTW1 | rna-NM_001178962.3_ZTW1 | cds-NP_010994.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:297850-298224:- | gene-YER071C_Sparadoxus | rna-NM_001178962.3_Sparadoxus | cds-NP_010994.3_Sparadoxus | 84.8 | 98.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |